JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBC1D20_chr20_430480_467533	0/0	t0044	3235	1	0	1	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0045	3235	1	0	0	1	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0046	3235	1	0	0	1	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0047	3235	1	1	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D20_chr20_430480_467533	0/0	t0048	3235	1	1	0	0	0	0	copy fasta	TBC1D20	chr20	430480	467533
TBC1D21_chr15_73868564_73894214	1/1	t0001	260	344	87	60	149	10	36	copy fasta	TBC1D21	chr15	73868564	73894214
TBC1D21_chr15_73868564_73894214	0/0	t0002	260	36	2	15	11	0	8	copy fasta	TBC1D21	chr15	73868564	73894214
TBC1D21_chr15_73868564_73894214	0/0	t0003	260	1	0	1	0	0	0	copy fasta	TBC1D21	chr15	73868564	73894214
TBC1D21_chr15_73868564_73894214	0/0	t0004	260	1	1	0	0	0	0	copy fasta	TBC1D21	chr15	73868564	73894214
TBC1D22A_chr22_46757650_47180693	0/0	t0001	2189	33	13	8	7	2	3	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0002	2189	16	16	0	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0003	2173	13	1	6	4	0	2	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0004	2205	11	8	2	0	1	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0005	2189	8	7	0	0	1	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0006	2205	4	3	1	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0007	2208	3	3	0	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0008	1851	3	2	1	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0009	2205	3	3	0	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0010	2189	3	3	0	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0011	2173	2	2	0	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0012	2173	1	0	0	1	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0013	2189	1	0	1	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0014	2189	1	0	0	1	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0015	2189	1	1	0	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0016	2205	1	0	1	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0017	2173	1	0	0	0	0	1	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0018	2189	1	0	0	1	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0019	2189	1	0	1	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0020	2205	1	1	0	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0021	2189	1	1	0	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0022	2189	1	0	1	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0023	2189	1	1	0	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22A_chr22_46757650_47180693	0/0	t0024	2173	1	1	0	0	0	0	copy fasta	TBC1D22A	chr22	46757650	47180693
TBC1D22B_chr6_37252772_37337970	0/1	t0001	1945	81	21	21	23	4	11	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	t0002	1945	49	17	17	7	3	5	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	t0003	1945	29	24	1	3	0	1	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	1/0	t0004	1945	25	2	8	11	1	2	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	t0005	1945	9	1	3	1	0	4	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	t0006	1945	8	6	2	0	0	0	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	t0007	1945	7	0	3	0	2	2	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	t0008	1945	4	4	0	0	0	0	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	t0009	1945	1	1	0	0	0	0	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	t0010	1945	1	0	0	1	0	0	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	t0011	1945	1	1	0	0	0	0	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	t0012	1945	1	0	0	0	0	1	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	t0013	1945	1	1	0	0	0	0	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	t0014	1945	1	1	0	0	0	0	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	t0015	1945	1	1	0	0	0	0	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	t0016	1945	1	1	0	0	0	0	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D22B_chr6_37252772_37337970	0/0	t0017	1945	1	1	0	0	0	0	copy fasta	TBC1D22B	chr6	37252772	37337970