JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBC1D22B_chr6_37252772_37337970	0/0	t0018	1945	1	0	1	0	0	0	copy fasta	TBC1D22B	chr6	37252772	37337970
TBC1D23_chr3_100255992_100330238	0/0	t0001	1598	277	44	48	154	10	21	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D23_chr3_100255992_100330238	1/0	t0002	1598	61	18	21	8	6	7	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D23_chr3_100255992_100330238	0/0	t0003	1598	7	7	0	0	0	0	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D23_chr3_100255992_100330238	0/0	t0004	1598	3	3	0	0	0	0	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D23_chr3_100255992_100330238	0/1	t0005	1598	2	0	1	0	0	0	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D23_chr3_100255992_100330238	0/0	t0006	1598	2	0	0	0	0	2	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D23_chr3_100255992_100330238	0/0	t0007	1598	2	2	0	0	0	0	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D23_chr3_100255992_100330238	0/0	t0008	1598	2	2	0	0	0	0	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D23_chr3_100255992_100330238	0/0	t0009	1598	1	1	0	0	0	0	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D23_chr3_100255992_100330238	0/0	t0010	1598	1	1	0	0	0	0	copy fasta	TBC1D23	chr3	100255992	100330238
TBC1D24_chr16_2470127_2510730	0/1	t0001	4933	71	1	18	31	9	11	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	1/0	t0002	4932	67	33	19	2	2	10	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0003	4932	27	0	0	18	0	9	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0004	4932	10	10	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0005	4944	5	5	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0006	4938	5	5	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0007	4933	5	0	0	1	0	4	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0008	4932	5	0	2	2	0	1	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0009	4937	3	3	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0010	4933	3	2	1	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0011	4932	3	0	2	0	1	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0012	4934	3	0	1	2	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0013	4932	3	0	0	3	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0014	4943	2	2	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0015	4945	2	2	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0016	4937	2	2	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0017	4932	2	2	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0018	4931	2	1	0	0	0	1	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0019	4933	2	0	0	2	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0020	4932	2	0	2	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0021	4933	2	0	0	2	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0022	4932	1	1	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0023	4931	1	1	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0024	4946	1	1	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0025	4946	1	1	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0026	4949	1	1	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0027	4932	1	0	1	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0028	4933	1	0	1	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0029	4932	1	0	1	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0030	4932	1	1	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0031	4932	1	1	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0032	4932	1	0	1	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0033	4932	1	0	0	1	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0034	4932	1	0	0	1	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0035	4932	1	0	0	1	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0036	4932	1	1	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0037	4932	1	1	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0038	4933	1	0	0	1	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0039	4933	1	0	0	1	0	0	copy fasta	TBC1D24	chr16	2470127	2510730