JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBC1D24_chr16_2470127_2510730	0/0	t0040	4934	1	0	0	1	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0041	4931	1	1	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0042	4932	1	0	0	1	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0043	4932	1	1	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0044	4933	1	0	0	1	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0045	4932	1	1	0	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0046	4933	1	0	0	0	0	1	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0047	4933	1	0	1	0	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0048	4934	1	0	0	0	0	1	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0049	4930	1	0	0	0	0	1	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0050	4932	1	0	0	1	0	0	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D24_chr16_2470127_2510730	0/0	t0051	4932	1	0	0	0	0	1	copy fasta	TBC1D24	chr16	2470127	2510730
TBC1D25_chrX_48534714_48567609	1/1	t0001	1719	238	43	42	114	9	28	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	t0002	1719	41	35	6	0	0	0	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	t0003	1720	3	0	1	1	0	1	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	t0004	1719	2	0	1	0	0	1	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	t0005	1719	1	0	0	0	0	1	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	t0006	1720	1	0	0	1	0	0	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	t0007	1719	1	0	0	1	0	0	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	t0008	1719	1	0	0	1	0	0	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	t0009	1719	1	1	0	0	0	0	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	t0010	1719	1	0	0	0	0	1	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	t0011	1718	1	0	0	1	0	0	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	t0012	1719	1	1	0	0	0	0	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	t0013	1719	1	0	0	1	0	0	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D25_chrX_48534714_48567609	0/0	t0014	1720	1	0	0	1	0	0	copy fasta	TBC1D25	chrX	48534714	48567609
TBC1D26_chr17_15727283_15749782	1/0	t0001	434	311	68	60	136	12	34	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/1	t0002	434	146	21	24	82	4	14	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	t0003	434	3	0	0	3	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	t0004	434	2	2	0	0	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	t0005	434	1	1	0	0	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D26_chr17_15727283_15749782	0/0	t0006	434	1	0	0	1	0	0	copy fasta	TBC1D26	chr17	15727283	15749782
TBC1D28_chr17_18629247_18649391	0/1	t0001	2590	260	38	35	162	6	18	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0002	2590	57	9	11	32	1	4	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0003	2591	53	6	21	10	5	11	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0004	2590	21	10	3	0	1	7	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0005	2590	15	0	0	15	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0006	2590	12	3	3	0	0	6	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0007	2597	9	8	1	0	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0008	2590	6	6	0	0	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0009	2590	4	4	0	0	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0010	2590	3	0	3	0	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0011	2606	3	3	0	0	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0012	2622	2	0	1	0	0	1	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0013	2590	2	0	0	1	0	1	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0014	2590	2	0	0	1	0	1	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	1/0	t0015	2591	2	0	1	0	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0016	2590	1	1	0	0	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0017	2591	1	1	0	0	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0018	2563	1	0	1	0	0	0	copy fasta	TBC1D28	chr17	18629247	18649391