JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBC1D28_chr17_18629247_18649391	0/0	t0019	2590	1	0	1	0	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0020	2590	1	1	0	0	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0021	2590	1	1	0	0	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0022	2590	1	1	0	0	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0023	2563	1	1	0	0	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0024	2590	1	0	0	0	0	1	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0025	2573	1	0	0	1	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0026	2573	1	1	0	0	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0027	2548	1	0	1	0	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0028	2590	1	1	0	0	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0029	2590	1	1	0	0	0	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D28_chr17_18629247_18649391	0/0	t0030	2590	1	0	0	0	1	0	copy fasta	TBC1D28	chr17	18629247	18649391
TBC1D2B_chr15_77989985_78082711	0/1	t0001	3234	84	7	22	33	5	16	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0002	3233	25	0	4	12	4	5	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	1/0	t0003	3235	23	21	1	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0004	3234	23	0	2	19	0	2	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0005	3235	13	2	4	0	0	7	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0006	3234	12	10	0	1	1	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0007	3234	10	1	4	0	3	2	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0008	3233	10	0	1	8	1	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0009	3234	6	6	0	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0010	3239	6	0	0	6	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0011	3234	5	5	0	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0012	3234	5	0	1	4	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0013	3235	5	1	2	0	1	1	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0014	3235	4	0	1	2	0	1	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0015	3234	4	2	2	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0016	3234	4	4	0	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0017	3235	4	4	0	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0018	3234	3	2	1	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0019	3236	3	3	0	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0020	3235	3	2	1	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0021	3234	2	0	0	1	0	1	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0022	3234	2	0	1	0	1	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0023	3234	2	0	0	2	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0024	3233	1	0	0	0	0	1	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0025	3235	1	1	0	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0026	3235	1	0	0	0	0	1	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0027	3234	1	0	0	0	0	1	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0028	3235	1	0	1	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0029	3234	1	1	0	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0030	3234	1	1	0	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0031	3234	1	0	1	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0032	3260	1	0	1	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0033	3234	1	1	0	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0034	3234	1	0	0	1	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0035	3234	1	1	0	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0036	3234	1	1	0	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0037	3239	1	0	0	1	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0038	3234	1	0	0	1	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711