JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBC1D2B_chr15_77989985_78082711	0/0	t0039	3234	1	1	0	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0040	3239	1	0	1	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0041	3233	1	0	0	0	0	1	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0042	3234	1	0	0	1	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0043	3234	1	0	0	0	0	1	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0044	3234	1	0	1	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2B_chr15_77989985_78082711	0/0	t0045	3234	1	1	0	0	0	0	copy fasta	TBC1D2B	chr15	77989985	78082711
TBC1D2_chr9_98194011_98260649	1/1	t0001	479	364	87	70	153	16	36	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	t0002	479	1	0	0	1	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D2_chr9_98194011_98260649	0/0	t0003	479	1	1	0	0	0	0	copy fasta	TBC1D2	chr9	98194011	98260649
TBC1D30_chr12_64819647_64886033	0/1	t0001	5479	114	15	24	53	4	17	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0002	5479	35	20	4	2	3	6	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	1/0	t0003	5479	33	0	4	19	2	7	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0004	5479	20	1	6	10	1	2	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0005	5479	18	2	9	4	2	1	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0006	5487	15	15	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0007	5479	10	8	2	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0008	5479	7	7	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0009	5479	6	5	1	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0010	5479	5	5	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0011	5479	4	0	0	0	0	4	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0012	5479	4	4	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0013	5479	3	3	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0014	5479	3	0	3	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0015	5479	3	0	0	3	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0016	5479	2	0	0	2	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0017	5479	2	0	2	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0018	5479	1	0	0	0	0	1	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0019	5479	1	1	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0020	5479	1	1	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0021	5479	1	1	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0022	5479	1	0	0	1	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0023	5479	1	0	1	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0024	5479	1	1	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0025	5479	1	1	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0026	5479	1	1	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0027	5487	1	1	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0028	5479	1	1	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0029	5479	1	1	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0030	5479	1	1	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D30_chr12_64819647_64886033	0/0	t0031	5479	1	1	0	0	0	0	copy fasta	TBC1D30	chr12	64819647	64886033
TBC1D31_chr8_123067707_123157153	1/1	t0001	278	322	90	72	112	10	36	copy fasta	TBC1D31	chr8	123067707	123157153
TBC1D32_chr6_121074494_121339480	1/1	t0001	1328	101	6	17	51	8	17	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0002	1329	53	19	4	21	2	7	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0003	1330	38	0	8	29	0	1	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0004	1327	18	4	6	8	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0005	1328	9	0	7	1	0	1	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0006	1328	7	7	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0007	1328	6	0	3	1	1	1	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0008	1328	6	6	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480