JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBC1D32_chr6_121074494_121339480	0/0	t0009	1329	5	5	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0010	1328	5	0	0	4	0	1	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0011	1328	5	0	2	3	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0012	1328	5	5	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0013	1328	4	4	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0014	1329	3	0	1	0	0	2	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0015	1328	3	3	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0016	1330	3	3	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0017	1328	3	2	1	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0018	1327	3	0	2	0	0	1	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0019	1329	3	3	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0020	1330	2	2	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0021	1328	2	0	2	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0022	1328	2	0	0	0	1	1	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0023	1327	1	1	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0024	1328	1	0	1	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0025	1329	1	0	0	1	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0026	1328	1	1	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0027	1327	1	1	0	0	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D32_chr6_121074494_121339480	0/0	t0028	1329	1	0	0	1	0	0	copy fasta	TBC1D32	chr6	121074494	121339480
TBC1D3B_chr17_36160683_36181636	1/0	t0001	470	51	4	17	27	0	2	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0002	470	32	0	9	12	6	5	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0003	470	24	14	2	6	1	1	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0004	470	20	7	5	4	0	4	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0005	470	16	1	0	15	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0006	470	13	0	6	3	0	4	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0007	470	8	1	1	3	0	3	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0008	470	7	7	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0009	470	4	0	1	3	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0010	470	3	0	0	3	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0011	470	2	0	1	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0012	470	2	0	0	0	1	1	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0013	470	2	2	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0014	469	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0015	469	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0016	470	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0017	470	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0018	469	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0019	470	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0020	470	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0021	470	1	0	1	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0022	470	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0023	470	1	0	1	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0024	470	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0025	470	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0026	470	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0027	470	1	0	0	1	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3B_chr17_36160683_36181636	0/0	t0028	470	1	1	0	0	0	0	copy fasta	TBC1D3B	chr17	36160683	36181636
TBC1D3C_chr17_38052693_38073634	0/0	t0001	455	39	14	2	21	0	2	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	t0002	455	23	7	5	7	2	2	copy fasta	TBC1D3C	chr17	38052693	38073634