JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBC1D3C_chr17_38052693_38073634	0/0	t0003	455	7	6	0	1	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	t0004	455	4	4	0	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	t0005	455	3	2	0	1	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	t0006	455	2	0	2	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	t0007	455	2	1	1	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	t0008	455	1	1	0	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	t0009	455	1	1	0	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	t0010	455	1	1	0	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3C_chr17_38052693_38073634	0/0	t0011	455	1	1	0	0	0	0	copy fasta	TBC1D3C	chr17	38052693	38073634
TBC1D3D_chr17_37998976_38019908	0/0	t0001	472	25	9	4	5	2	5	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	t0002	472	21	3	3	10	0	5	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	t0003	472	8	7	1	0	0	0	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	t0004	472	4	3	1	0	0	0	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	t0005	472	3	2	1	0	0	0	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	t0006	472	2	2	0	0	0	0	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	t0007	472	1	0	0	1	0	0	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	t0008	472	1	1	0	0	0	0	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3D_chr17_37998976_38019908	0/0	t0009	472	1	1	0	0	0	0	copy fasta	TBC1D3D	chr17	37998976	38019908
TBC1D3E_chr17_38122951_38143868	0/0	t0001	432	14	9	1	4	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	t0002	432	13	8	1	4	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	t0003	432	4	4	0	0	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3E_chr17_38122951_38143868	0/0	t0004	432	1	1	0	0	0	0	copy fasta	TBC1D3E	chr17	38122951	38143868
TBC1D3G_chr17_36318884_36339759	0/0	t0001	415	83	16	29	24	4	10	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	t0002	415	46	3	15	20	0	8	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	t0003	415	15	3	2	9	0	1	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	t0004	415	3	0	0	3	0	0	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3G_chr17_36318884_36339759	0/0	t0005	415	1	0	0	0	0	1	copy fasta	TBC1D3G	chr17	36318884	36339759
TBC1D3H_chr17_36372531_36393435	0/0	t0001	427	110	12	25	50	5	18	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	t0002	427	18	2	1	14	0	1	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	t0003	427	9	2	1	3	1	2	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	t0004	427	6	4	0	0	0	2	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	t0005	427	5	0	0	5	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	t0006	427	3	2	1	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	t0007	427	2	1	0	1	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	t0008	427	1	0	0	0	0	1	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	t0009	427	1	1	0	0	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3H_chr17_36372531_36393435	0/0	t0010	427	1	0	0	1	0	0	copy fasta	TBC1D3H	chr17	36372531	36393435
TBC1D3I_chr17_36248639_36269570	0/0	t0001	472	81	11	20	41	0	9	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	t0002	472	77	18	25	21	2	11	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	t0003	472	5	4	0	1	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	t0004	472	4	4	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	t0005	472	4	4	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	t0006	472	3	0	0	3	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	t0007	472	2	1	1	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	t0008	472	1	0	0	1	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	t0009	472	1	0	0	1	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	t0010	472	1	0	0	1	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	t0011	472	1	1	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	t0012	472	1	1	0	0	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570
TBC1D3I_chr17_36248639_36269570	0/0	t0013	472	1	0	0	1	0	0	copy fasta	TBC1D3I	chr17	36248639	36269570