JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBC1D3K_chr17_37919415_37940371	0/0	t0001	472	60	1	5	48	1	5	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	t0002	472	13	5	6	1	0	1	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	t0003	472	10	4	1	5	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	t0004	472	9	4	1	3	0	1	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	t0005	472	8	4	1	1	0	2	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	t0006	472	3	0	1	1	1	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	t0007	472	2	0	0	2	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	t0008	472	2	0	1	0	0	1	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	t0009	472	1	0	0	1	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	t0010	452	1	0	0	1	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	t0011	472	1	1	0	0	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	t0012	482	1	0	0	1	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3K_chr17_37919415_37940371	0/0	t0013	472	1	1	0	0	0	0	copy fasta	TBC1D3K	chr17	37919415	37940371
TBC1D3L_chr17_37973155_37994060	0/0	t0001	1842	3	3	0	0	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	t0002	1842	2	2	0	0	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	t0003	1842	2	2	0	0	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	t0004	1842	1	1	0	0	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	t0005	1842	1	1	0	0	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	t0006	1842	1	1	0	0	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	t0007	1856	1	1	0	0	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	t0008	1856	1	0	0	1	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	t0009	1856	1	1	0	0	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	t0010	1856	1	0	0	1	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	t0011	1856	1	0	0	1	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3L_chr17_37973155_37994060	0/0	t0012	1856	1	0	0	1	0	0	copy fasta	TBC1D3L	chr17	37973155	37994060
TBC1D3_chr17_38176659_38197555	0/0	t0001	427	51	9	14	18	0	10	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	t0002	427	10	6	2	1	0	1	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	t0003	427	2	2	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	t0004	427	2	0	2	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	t0005	427	2	2	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	t0006	427	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	t0007	427	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	t0008	427	1	1	0	0	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	t0009	427	1	0	0	1	0	0	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D3_chr17_38176659_38197555	0/0	t0010	427	1	0	0	0	0	1	copy fasta	TBC1D3	chr17	38176659	38197555
TBC1D4_chr13_75278503_75487169	0/1	t0001	3692	41	4	13	14	2	7	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0002	3692	37	1	9	16	1	10	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0003	3692	36	8	14	7	1	6	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0004	3692	18	17	0	0	0	1	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0005	3692	11	10	1	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0006	3692	8	8	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0007	3693	6	0	0	6	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0008	3692	5	5	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0009	3692	5	5	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0010	3691	4	4	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0011	3692	3	3	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0012	3692	3	3	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0013	3692	3	3	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0014	3693	2	0	0	2	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0015	3692	2	0	0	0	0	2	copy fasta	TBC1D4	chr13	75278503	75487169