JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBC1D4_chr13_75278503_75487169	0/0	t0016	3692	2	1	1	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0017	3692	2	2	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0018	3692	2	1	1	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0019	3692	2	2	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0020	3692	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0021	3692	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0022	3692	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0023	3692	1	0	0	1	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0024	3692	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0025	3692	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0026	3692	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0027	3692	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0028	3692	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0029	3692	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0030	3692	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	1/0	t0031	3692	1	0	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0032	3691	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0033	3692	1	0	0	1	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0034	3692	1	0	0	1	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0035	3692	1	0	0	1	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0036	3692	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0037	3692	1	0	0	1	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0038	3692	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0039	3692	1	0	1	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0040	3692	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D4_chr13_75278503_75487169	0/0	t0041	3692	1	1	0	0	0	0	copy fasta	TBC1D4	chr13	75278503	75487169
TBC1D5_chr3_17152168_17747631	0/0	t0001	4049	64	28	17	1	6	12	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0002	4049	19	17	1	0	0	1	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0003	4051	16	2	6	6	0	2	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/1	t0004	4051	14	6	2	1	0	4	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	1/0	t0005	4047	12	0	6	0	2	3	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0006	4045	6	0	1	3	0	2	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0007	4044	4	1	3	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0008	4049	4	4	0	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0009	4048	3	2	1	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0010	4051	2	2	0	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0011	4052	2	0	0	2	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0012	4051	2	0	0	2	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0013	4051	1	0	1	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0014	4049	1	0	1	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0015	4052	1	0	0	0	0	1	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0016	4049	1	1	0	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0017	4049	1	1	0	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0018	4049	1	1	0	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0019	4049	1	0	1	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0020	4051	1	0	0	0	0	1	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0021	4049	1	0	0	1	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0022	4050	1	1	0	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0023	4048	1	1	0	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0024	4052	1	1	0	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631