Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BORA_chr13_72722923_72761196	0/0	t0010	1081	1	0	0	1	0	0	copy fasta	BORA	chr13	72722923	72761196
BORA_chr13_72722923_72761196	0/0	t0011	1081	1	1	0	0	0	0	copy fasta	BORA	chr13	72722923	72761196
BORCS6_chr17_8183345_8195180	1/1	t0001	763	399	81	77	181	14	44	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	t0002	763	7	7	0	0	0	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	t0003	763	3	0	0	3	0	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	t0004	763	2	0	0	2	0	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	t0005	763	1	1	0	0	0	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	t0006	763	1	1	0	0	0	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	t0007	763	1	0	0	0	1	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	t0008	763	1	0	1	0	0	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS6_chr17_8183345_8195180	0/0	t0009	763	1	0	0	0	1	0	copy fasta	BORCS6	chr17	8183345	8195180
BORCS7_chr10_102849259_102869961	1/1	t0001	2066	212	53	33	93	7	24	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	t0002	2066	117	21	10	67	1	18	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	t0003	2065	59	15	16	23	5	0	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	t0004	2066	23	0	7	16	0	0	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	t0005	2066	13	0	0	12	0	1	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	t0006	2066	12	1	7	0	1	3	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	t0007	2066	4	0	2	0	0	2	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	t0008	2066	2	0	0	0	2	0	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	t0009	2065	2	0	0	2	0	0	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	t0010	2066	1	1	0	0	0	0	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	t0011	2066	1	1	0	0	0	0	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	t0012	2066	1	0	0	1	0	0	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	t0013	2066	1	1	0	0	0	0	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	t0014	2066	1	1	0	0	0	0	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	t0015	2066	1	0	1	0	0	0	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	t0016	2066	1	0	0	1	0	0	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	t0017	2065	1	0	1	0	0	0	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	t0018	2065	1	0	1	0	0	0	copy fasta	BORCS7	chr10	102849259	102869961
BORCS7_chr10_102849259_102869961	0/0	t0019	2066	1	0	0	1	0	0	copy fasta	BORCS7	chr10	102849259	102869961
BORCS8_chr19_19171906_19197152	1/0	t0001	633	137	52	26	42	2	14	copy fasta	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	t0002	634	114	17	34	41	9	13	copy fasta	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	t0003	633	113	12	7	75	4	15	copy fasta	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	t0004	633	29	12	0	13	1	3	copy fasta	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/1	t0005	633	21	0	11	8	0	1	copy fasta	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	t0006	633	4	4	0	0	0	0	copy fasta	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	t0007	633	3	3	0	0	0	0	copy fasta	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	t0008	634	2	0	0	2	0	0	copy fasta	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	t0009	633	2	0	0	2	0	0	copy fasta	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	t0010	633	1	0	0	1	0	0	copy fasta	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	t0011	634	1	0	0	1	0	0	copy fasta	BORCS8	chr19	19171906	19197152
BORCS8_chr19_19171906_19197152	0/0	t0012	633	1	0	0	1	0	0	copy fasta	BORCS8	chr19	19171906	19197152
BPGM_chr7_134641853_134684816	1/1	t0001	932	329	66	65	152	16	28	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	t0002	935	11	5	2	0	0	4	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	t0003	935	4	2	0	1	0	1	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	t0004	932	4	4	0	0	0	0	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	t0005	932	3	0	0	0	0	3	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	t0006	929	3	2	0	1	0	0	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	t0007	932	2	0	0	0	0	2	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	t0008	950	1	1	0	0	0	0	copy fasta	BPGM	chr7	134641853	134684816