JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBC1D5_chr3_17152168_17747631	0/0	t0025	4047	1	1	0	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D5_chr3_17152168_17747631	0/0	t0026	4047	1	1	0	0	0	0	copy fasta	TBC1D5	chr3	17152168	17747631
TBC1D7_chr6_13299951_13333537	1/1	t0001	401	167	45	36	58	7	19	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	t0002	401	95	12	7	65	4	7	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	t0003	413	72	8	21	23	7	13	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	t0004	401	31	0	0	31	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	t0005	401	29	3	0	24	0	2	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	t0006	407	13	9	3	1	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	t0007	401	13	10	2	1	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	t0008	401	6	5	1	0	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	t0009	419	3	1	0	2	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	t0010	401	3	3	0	0	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	t0011	527	1	0	0	0	0	1	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	t0012	479	1	0	1	0	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	t0013	473	1	0	1	0	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	t0014	413	1	0	0	0	0	1	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	t0015	413	1	0	0	0	0	1	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	t0016	401	1	0	0	1	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	t0017	401	1	1	0	0	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D7_chr6_13299951_13333537	0/0	t0018	413	1	1	0	0	0	0	copy fasta	TBC1D7	chr6	13299951	13333537
TBC1D8B_chrX_106797673_106881150	1/1	t0001	2367	208	53	30	91	8	24	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	t0002	2367	4	0	1	0	1	2	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	t0003	2366	4	0	0	4	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	t0004	2367	3	3	0	0	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	t0005	2368	2	1	0	1	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	t0006	2367	1	1	0	0	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	t0007	2335	1	0	0	1	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	t0008	2367	1	0	1	0	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	t0009	2365	1	1	0	0	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8B_chrX_106797673_106881150	0/0	t0010	2367	1	1	0	0	0	0	copy fasta	TBC1D8B	chrX	106797673	106881150
TBC1D8_chr2_101002228_101156382	1/1	t0001	723	252	59	43	115	7	26	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	t0002	723	65	8	14	28	3	12	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	t0003	723	8	8	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	t0004	723	4	4	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	t0005	723	1	0	1	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	t0006	723	1	0	0	1	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D8_chr2_101002228_101156382	0/0	t0007	723	1	1	0	0	0	0	copy fasta	TBC1D8	chr2	101002228	101156382
TBC1D9B_chr5_179857071_179912897	0/0	t0001	1454	101	32	16	48	1	4	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	t0002	1454	73	4	15	32	7	15	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	t0003	1454	56	1	11	30	0	14	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/1	t0004	1454	56	5	14	24	2	10	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	t0005	1454	31	30	1	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	t0006	1441	13	12	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	1/0	t0007	1454	10	0	6	0	2	1	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	t0008	1454	5	5	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	t0009	1468	2	0	0	2	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	t0010	1454	2	0	0	2	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	t0011	1454	2	0	0	2	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	t0012	1482	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	t0013	1468	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897