JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBC1D9B_chr5_179857071_179912897	0/0	t0014	1468	1	0	0	0	0	1	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	t0015	1454	1	1	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	t0016	1454	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	t0017	1454	1	0	1	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	t0018	1454	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	t0019	1454	1	0	0	1	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	t0020	1454	1	1	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	t0021	1454	1	1	0	0	0	0	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9B_chr5_179857071_179912897	0/0	t0022	1441	1	0	0	0	0	1	copy fasta	TBC1D9B	chr5	179857071	179912897
TBC1D9_chr4_140615782_140761385	1/0	t0001	1754	225	63	46	85	9	21	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/1	t0002	1754	34	9	8	12	1	3	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	t0003	1754	14	3	7	3	0	1	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	t0004	1754	5	0	0	5	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	t0005	1754	4	3	1	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	t0006	1754	3	2	1	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	t0007	1754	3	0	0	3	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	t0008	1754	1	1	0	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	t0009	1754	1	1	0	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	t0010	1754	1	0	0	1	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	t0011	1754	1	1	0	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	t0012	1754	1	1	0	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	t0013	1754	1	0	1	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	t0014	1754	1	1	0	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	t0015	1754	1	0	0	0	0	1	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	t0016	1754	1	0	0	1	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBC1D9_chr4_140615782_140761385	0/0	t0017	1754	1	1	0	0	0	0	copy fasta	TBC1D9	chr4	140615782	140761385
TBCA_chr5_77686166_77781339	1/1	t0001	335	336	81	44	166	11	32	copy fasta	TBCA	chr5	77686166	77781339
TBCA_chr5_77686166_77781339	0/0	t0002	335	15	1	8	0	1	5	copy fasta	TBCA	chr5	77686166	77781339
TBCA_chr5_77686166_77781339	0/0	t0003	335	1	1	0	0	0	0	copy fasta	TBCA	chr5	77686166	77781339
TBCA_chr5_77686166_77781339	0/0	t0004	335	1	1	0	0	0	0	copy fasta	TBCA	chr5	77686166	77781339
TBCA_chr5_77686166_77781339	0/0	t0005	335	1	0	0	0	0	1	copy fasta	TBCA	chr5	77686166	77781339
TBCB_chr19_36110468_36130941	1/1	t0001	253	409	70	71	202	16	48	copy fasta	TBCB	chr19	36110468	36130941
TBCB_chr19_36110468_36130941	0/0	t0002	256	37	26	7	0	2	2	copy fasta	TBCB	chr19	36110468	36130941
TBCB_chr19_36110468_36130941	0/0	t0003	275	1	0	0	1	0	0	copy fasta	TBCB	chr19	36110468	36130941
TBCB_chr19_36110468_36130941	0/0	t0004	253	1	0	0	1	0	0	copy fasta	TBCB	chr19	36110468	36130941
TBCCD1_chr3_186541067_186572339	0/1	t0001	1027	111	41	24	29	5	11	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0002	1027	111	2	30	56	7	16	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0003	1027	77	24	9	36	3	5	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0004	1028	15	0	0	10	1	4	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0005	1031	10	8	2	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0006	1028	9	2	4	3	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0007	1028	7	1	2	2	0	2	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0008	1029	6	6	0	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0009	1027	3	0	0	0	0	3	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0010	1027	3	0	1	0	2	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0011	1028	3	3	0	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0012	1027	3	3	0	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0013	1027	2	0	0	0	0	2	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	1/0	t0014	1027	2	0	1	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0015	1027	2	0	0	2	0	0	copy fasta	TBCCD1	chr3	186541067	186572339