JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBCCD1_chr3_186541067_186572339	0/0	t0016	1027	1	0	0	0	0	1	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0017	1027	1	1	0	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0018	1027	1	1	0	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0019	1027	1	0	0	1	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0020	1027	1	0	0	1	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0021	1027	1	0	0	1	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0022	1027	1	0	1	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0023	1027	1	0	0	1	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0024	1027	1	1	0	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCCD1_chr3_186541067_186572339	0/0	t0025	1031	1	1	0	0	0	0	copy fasta	TBCCD1	chr3	186541067	186572339
TBCC_chr6_42739498_42751103	1/1	t0001	566	378	91	74	152	16	43	copy fasta	TBCC	chr6	42739498	42751103
TBCC_chr6_42739498_42751103	0/0	t0002	566	5	1	3	0	0	1	copy fasta	TBCC	chr6	42739498	42751103
TBCC_chr6_42739498_42751103	0/0	t0003	566	1	1	0	0	0	0	copy fasta	TBCC	chr6	42739498	42751103
TBCC_chr6_42739498_42751103	0/0	t0004	566	1	1	0	0	0	0	copy fasta	TBCC	chr6	42739498	42751103
TBCC_chr6_42739498_42751103	0/0	t0005	566	1	0	1	0	0	0	copy fasta	TBCC	chr6	42739498	42751103
TBCD_chr17_82747065_82950914	1/0	t0001	3581	59	10	10	29	3	6	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0002	3585	58	13	8	25	4	8	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0003	3585	48	4	12	21	5	6	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0004	3581	25	0	8	12	2	3	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0005	3580	13	9	1	2	0	1	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0006	3585	12	0	0	12	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0007	3581	12	9	3	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0008	3581	12	11	1	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0009	3581	11	8	3	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0010	3580	6	0	6	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0011	3581	5	5	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0012	3585	4	4	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0013	3585	4	0	0	0	0	4	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0014	3581	4	4	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0015	3585	4	0	0	4	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0016	3585	3	0	0	3	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0017	3581	3	0	2	0	1	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0018	3586	3	0	3	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0019	3581	2	0	2	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0020	3581	2	2	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0021	3580	2	2	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0022	3581	2	2	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0023	3581	2	2	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0024	3585	1	0	1	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0025	3585	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0026	3581	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0027	3585	1	0	0	0	0	1	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0028	3585	1	0	0	0	0	1	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0029	3581	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0030	3581	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0031	3581	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/1	t0032	3581	1	0	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0033	3581	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0034	3580	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0035	3581	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914