JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBCD_chr17_82747065_82950914	0/0	t0036	3581	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0037	3581	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0038	3581	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0039	3585	1	0	1	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0040	3581	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0041	3585	1	0	0	0	1	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0042	3585	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0043	3584	1	0	1	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0044	3581	1	1	0	0	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCD_chr17_82747065_82950914	0/0	t0045	3580	1	0	0	1	0	0	copy fasta	TBCD	chr17	82747065	82950914
TBCEL_chr11_121019102_121095776	1/0	t0001	3996	120	28	29	47	3	12	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0002	3996	75	5	15	43	4	8	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/1	t0003	3996	28	17	9	0	0	1	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0004	3996	7	7	0	0	0	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0005	3996	4	4	0	0	0	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0006	3997	4	4	0	0	0	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0007	3998	3	3	0	0	0	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0008	3996	3	0	2	0	1	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0009	3996	3	1	1	0	1	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0010	3996	3	3	0	0	0	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0011	3998	2	2	0	0	0	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0012	3996	2	2	0	0	0	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0013	3996	2	2	0	0	0	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0014	3996	1	1	0	0	0	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0015	3996	1	0	1	0	0	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0016	3996	1	0	0	0	1	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0017	3996	1	0	0	1	0	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0018	3996	1	0	0	1	0	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0019	3998	1	1	0	0	0	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0020	3996	1	0	1	0	0	0	copy fasta	TBCEL	chr11	121019102	121095776
TBCEL_chr11_121019102_121095776	0/0	t0021	3996	1	0	0	0	0	1	copy fasta	TBCEL	chr11	121019102	121095776
TBCE_chr1_235362427_235457443	0/1	t0001	3790	70	10	22	25	1	11	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	1/0	t0002	3791	61	3	14	32	1	10	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0003	3789	32	5	9	11	5	2	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0004	3795	27	14	4	3	0	6	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0005	3788	14	10	3	0	0	1	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0006	3791	9	2	0	7	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0007	3791	7	4	1	2	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0008	3788	5	5	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0009	3795	3	2	1	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0010	3795	3	3	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0011	3792	3	0	0	1	0	2	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0012	3789	3	3	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0013	3790	3	1	2	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0014	3789	2	2	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0015	3790	2	0	0	1	0	1	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0016	3787	2	1	1	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0017	3795	1	1	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0018	3788	1	1	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0019	3795	1	0	0	1	0	0	copy fasta	TBCE	chr1	235362427	235457443