JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBCE_chr1_235362427_235457443	0/0	t0020	3790	1	0	1	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0021	3790	1	0	0	0	0	1	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0022	3791	1	0	0	0	0	1	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0023	3791	1	0	0	0	0	1	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0024	3791	1	0	0	0	1	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0025	3791	1	0	0	1	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0026	3778	1	1	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0027	3778	1	1	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0028	3790	1	0	0	1	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0029	3790	1	0	0	1	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0030	3791	1	1	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0031	3790	1	1	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0032	3789	1	0	1	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0033	3789	1	1	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0034	3790	1	1	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0035	3790	1	1	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0036	3790	1	1	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0037	3790	1	1	0	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCE_chr1_235362427_235457443	0/0	t0038	3790	1	0	1	0	0	0	copy fasta	TBCE	chr1	235362427	235457443
TBCK_chr4_106036599_106321209	1/1	t0001	5280	89	19	16	42	2	8	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0002	5274	64	3	8	41	1	11	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0003	5278	29	4	0	20	0	5	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0004	5278	27	0	11	16	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0005	5282	7	1	2	0	2	2	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0006	5281	7	0	2	5	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0007	5280	7	0	0	5	1	1	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0008	5266	6	6	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0009	5278	6	4	2	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0010	5264	5	5	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0011	5277	5	0	5	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0012	5280	5	0	0	5	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0013	5278	4	0	2	0	1	1	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0014	5280	3	3	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0015	5276	3	0	0	3	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0016	5282	3	3	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0017	5278	2	2	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0018	5280	2	2	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0019	5277	2	0	2	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0020	5277	2	2	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0021	5282	2	0	0	1	1	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0022	5281	2	2	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0023	5280	2	0	2	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0024	5279	2	1	0	1	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0025	5275	2	0	0	1	0	1	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0026	5280	2	0	0	2	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0027	5279	2	2	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0028	5280	1	0	0	1	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0029	5278	1	0	0	1	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0030	5279	1	1	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0031	5277	1	1	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209