JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBCK_chr4_106036599_106321209	0/0	t0032	5266	1	1	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0033	5264	1	1	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0034	5278	1	0	1	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0035	5280	1	1	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0036	5276	1	1	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0037	5278	1	1	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0038	5280	1	0	1	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0039	5280	1	0	1	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0040	5280	1	0	0	1	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0041	5280	1	1	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0042	5280	1	1	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0043	5278	1	1	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0044	5276	1	0	1	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0045	5274	1	1	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0046	5274	1	0	0	0	0	1	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0047	5278	1	1	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0048	5274	1	0	1	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0049	5280	1	0	0	1	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0050	5282	1	0	0	1	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0051	5277	1	0	1	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0052	5280	1	1	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0053	5279	1	1	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0054	5277	1	1	0	0	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBCK_chr4_106036599_106321209	0/0	t0055	5280	1	0	0	1	0	0	copy fasta	TBCK	chr4	106036599	106321209
TBK1_chr12_64447120_64507114	1/0	t0001	833	265	70	39	122	7	26	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/1	t0002	831	112	14	26	52	5	14	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	t0003	833	4	0	0	4	0	0	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	t0004	833	3	2	1	0	0	0	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	t0005	833	2	2	0	0	0	0	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	t0006	831	2	0	0	2	0	0	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	t0007	833	1	0	0	1	0	0	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	t0008	833	1	1	0	0	0	0	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	t0009	833	1	1	0	0	0	0	copy fasta	TBK1	chr12	64447120	64507114
TBK1_chr12_64447120_64507114	0/0	t0010	831	1	0	0	1	0	0	copy fasta	TBK1	chr12	64447120	64507114
TBKBP1_chr17_47689161_47717052	1/1	t0001	1495	358	77	59	169	10	41	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	t0002	1495	9	0	6	0	2	1	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	t0003	1496	4	1	1	2	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	t0004	1495	3	0	0	3	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	t0005	1495	2	2	0	0	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	t0006	1495	2	0	2	0	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	t0007	1495	1	0	0	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	t0008	1495	1	1	0	0	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	t0009	1495	1	1	0	0	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	t0010	1496	1	1	0	0	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	t0011	1495	1	1	0	0	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	t0012	1495	1	0	0	1	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	t0013	1495	1	1	0	0	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBKBP1_chr17_47689161_47717052	0/0	t0014	1495	1	1	0	0	0	0	copy fasta	TBKBP1	chr17	47689161	47717052
TBL1XR1_chr3_177014344_177202482	1/1	t0001	6638	92	25	14	27	5	19	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0002	6639	53	4	9	34	2	4	copy fasta	TBL1XR1	chr3	177014344	177202482