JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBL1XR1_chr3_177014344_177202482	0/0	t0003	6638	18	1	7	8	1	1	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0004	6638	14	1	0	13	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0005	6637	9	8	1	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0006	6638	9	8	1	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0007	6638	8	0	0	8	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0008	6636	7	0	1	0	1	5	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0009	6637	6	0	2	2	1	1	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0010	6637	6	5	1	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0011	6637	5	0	3	0	1	1	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0012	6640	5	0	4	1	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0013	6638	4	3	1	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0014	6638	4	0	3	0	0	1	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0015	6639	4	0	0	4	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0016	6638	4	0	0	4	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0017	6637	3	3	0	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0018	6637	3	0	0	0	0	3	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0019	6638	3	3	0	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0020	6638	3	0	2	0	0	1	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0021	6638	3	0	3	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0022	6639	3	0	2	1	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0023	6639	3	1	0	2	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0024	6637	2	0	0	0	0	2	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0025	6637	2	2	0	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0026	6638	2	2	0	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0027	6638	2	2	0	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0028	6638	1	0	0	1	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0029	6638	1	1	0	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0030	6636	1	0	0	0	1	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0031	6637	1	0	1	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0032	6638	1	1	0	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0033	6638	1	0	0	1	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0034	6638	1	0	1	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0035	6638	1	0	1	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0036	6638	1	1	0	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0037	6638	1	0	0	1	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0038	6638	1	0	1	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0039	6639	1	1	0	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0040	6638	1	0	0	1	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0041	6638	1	0	1	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0042	6639	1	0	1	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0043	6638	1	0	1	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0044	6639	1	0	0	1	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0045	6638	1	0	0	1	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0046	6639	1	0	0	1	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0047	6638	1	0	0	0	0	1	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0048	6638	1	0	0	1	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0049	6638	1	1	0	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0050	6638	1	1	0	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0051	6637	1	1	0	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0052	6637	1	0	1	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482