JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBL1XR1_chr3_177014344_177202482	0/0	t0053	6638	1	1	0	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0054	6638	1	1	0	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0055	6638	1	0	0	0	0	1	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1XR1_chr3_177014344_177202482	0/0	t0056	6637	1	1	0	0	0	0	copy fasta	TBL1XR1	chr3	177014344	177202482
TBL1X_chrX_9460058_9724740	0/0	t0001	4083	50	0	10	36	0	4	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/1	t0002	4085	22	0	4	11	0	6	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	1/0	t0003	4085	14	1	3	4	0	5	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0004	4083	12	3	2	3	3	1	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0005	4084	10	3	5	2	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0006	4085	9	6	2	1	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0007	4085	8	8	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0008	4084	6	0	4	0	0	2	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0009	4085	6	6	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0010	4082	4	2	2	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0011	4086	4	4	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0012	4086	3	1	2	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0013	4085	3	1	2	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0014	4084	3	3	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0015	4083	2	0	0	0	0	2	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0016	4084	2	2	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0017	4085	2	2	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0018	4084	2	2	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0019	4085	2	0	0	1	1	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0020	4084	1	0	0	1	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0021	4087	1	0	0	1	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0022	4086	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0023	4086	1	0	1	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0024	4085	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0025	4085	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0026	4085	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0027	4085	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0028	4078	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0029	4084	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0030	4084	1	0	1	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0031	4083	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0032	4084	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0033	4083	1	0	0	1	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0034	4082	1	0	0	1	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0035	4090	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0036	4082	1	0	1	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0037	4085	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0038	4085	1	0	0	0	0	1	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0039	4085	1	0	0	1	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0040	4086	1	0	0	0	1	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0041	4084	1	0	0	1	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0042	4085	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0043	4084	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0044	4084	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0045	4085	1	0	1	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0046	4085	1	0	1	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740