JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBL1X_chrX_9460058_9724740	0/0	t0047	4084	1	0	0	1	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0048	4085	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0049	4085	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0050	4085	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0051	4085	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0052	4085	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0053	4084	1	0	0	0	0	1	copy fasta	TBL1X	chrX	9460058	9724740
TBL1X_chrX_9460058_9724740	0/0	t0054	4085	1	1	0	0	0	0	copy fasta	TBL1X	chrX	9460058	9724740
TBL1Y_chrY_6905697_7096683	1/1	t0001	828	127	18	19	68	5	15	copy fasta	TBL1Y	chrY	6905697	7096683
TBL1Y_chrY_6905697_7096683	0/0	t0002	828	1	0	0	0	0	1	copy fasta	TBL1Y	chrY	6905697	7096683
TBL2_chr7_73562537_73583579	1/0	t0001	3001	156	42	27	68	3	15	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0002	3001	107	1	26	55	10	15	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/1	t0003	3001	38	6	2	25	1	3	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0004	3001	21	13	6	0	0	2	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0005	3001	19	2	5	11	0	1	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0006	3001	9	0	3	0	3	3	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0007	3001	8	8	0	0	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0008	3001	6	5	1	0	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0009	3001	3	3	0	0	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0010	3001	3	3	0	0	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0011	3001	2	0	2	0	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0012	3001	2	2	0	0	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0013	3001	1	0	0	1	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0014	3001	1	1	0	0	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0015	3001	1	0	1	0	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0016	3001	1	0	1	0	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0017	3001	1	0	0	1	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0018	3001	1	0	0	1	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0019	3001	1	1	0	0	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0020	3001	1	1	0	0	0	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0021	3001	1	0	0	0	1	0	copy fasta	TBL2	chr7	73562537	73583579
TBL2_chr7_73562537_73583579	0/0	t0022	3001	1	0	0	0	0	1	copy fasta	TBL2	chr7	73562537	73583579
TBL3_chr16_1967053_1987929	1/0	t0001	4357	162	17	33	81	10	20	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	t0002	4355	69	25	4	38	0	2	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	t0003	4342	43	1	18	9	2	13	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	t0004	4357	41	0	5	29	3	4	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	t0005	4344	8	8	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	t0006	4355	8	8	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	t0007	4344	7	0	6	0	1	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	t0008	4357	5	2	0	3	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/1	t0009	4344	5	0	2	0	1	1	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	t0010	4355	3	3	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	t0011	4355	3	3	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	t0012	4355	3	1	2	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	t0013	4357	3	0	0	3	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	t0014	4355	2	0	2	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	t0015	4355	2	0	0	2	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	t0016	4357	2	0	2	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	t0017	4357	2	2	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	t0018	4357	2	0	0	0	0	2	copy fasta	TBL3	chr16	1967053	1987929