Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BPGM_chr7_134641853_134684816	0/0	t0009	932	1	0	0	1	0	0	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	t0010	932	1	1	0	0	0	0	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	t0011	932	1	1	0	0	0	0	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	t0012	932	1	0	1	0	0	0	copy fasta	BPGM	chr7	134641853	134684816
BPGM_chr7_134641853_134684816	0/0	t0013	932	1	0	0	1	0	0	copy fasta	BPGM	chr7	134641853	134684816
BPHL_chr6_3113711_3158578	0/1	t0001	1034	264	42	47	140	4	30	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	t0002	1034	20	11	0	3	1	5	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	t0003	1034	17	3	6	6	0	2	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	t0004	1034	15	14	1	0	0	0	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	t0005	1034	12	10	2	0	0	0	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	t0006	1034	7	6	1	0	0	0	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	1/0	t0007	1034	5	0	2	0	2	0	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	t0008	1034	2	1	0	0	0	1	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	t0009	1034	2	2	0	0	0	0	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	t0010	1034	1	1	0	0	0	0	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	t0011	1034	1	0	0	0	1	0	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	t0012	1034	1	1	0	0	0	0	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	t0013	1034	1	1	0	0	0	0	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	t0014	1034	1	0	0	1	0	0	copy fasta	BPHL	chr6	3113711	3158578
BPHL_chr6_3113711_3158578	0/0	t0015	1034	1	0	1	0	0	0	copy fasta	BPHL	chr6	3113711	3158578
BPIFA1_chr20_33230996_33248306	1/0	t0001	305	252	36	58	124	9	24	copy fasta	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/1	t0002	305	79	19	9	39	2	9	copy fasta	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	t0003	305	31	28	1	0	0	2	copy fasta	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	t0004	305	8	6	2	0	0	0	copy fasta	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	t0005	305	4	1	2	0	1	0	copy fasta	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	t0006	305	3	3	0	0	0	0	copy fasta	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	t0007	305	2	2	0	0	0	0	copy fasta	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	t0008	305	1	0	0	0	0	1	copy fasta	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	t0009	305	1	0	0	1	0	0	copy fasta	BPIFA1	chr20	33230996	33248306
BPIFA1_chr20_33230996_33248306	0/0	t0010	305	1	1	0	0	0	0	copy fasta	BPIFA1	chr20	33230996	33248306
BPIFA2_chr20_33163159_33186412	1/1	t0001	293	372	90	72	155	14	39	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	t0002	293	2	2	0	0	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	t0003	293	2	2	0	0	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	t0004	293	1	0	0	1	0	0	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA2_chr20_33163159_33186412	0/0	t0005	293	1	0	0	0	0	1	copy fasta	BPIFA2	chr20	33163159	33186412
BPIFA3_chr20_33212352_33232806	1/1	t0001	375	365	56	70	177	16	44	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	t0002	376	48	40	2	6	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	t0003	375	2	0	0	2	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFA3_chr20_33212352_33232806	0/0	t0004	375	1	0	0	1	0	0	copy fasta	BPIFA3	chr20	33212352	33232806
BPIFB1_chr20_33278214_33314871	1/1	t0001	187	350	85	74	132	16	41	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	t0002	187	37	13	6	18	0	0	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB1_chr20_33278214_33314871	0/0	t0003	187	1	0	0	0	0	1	copy fasta	BPIFB1	chr20	33278214	33314871
BPIFB2_chr20_33002704_33028703	1/1	t0001	412	282	64	66	112	11	27	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	t0002	412	95	32	11	35	4	13	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	t0003	412	6	1	4	0	1	0	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	t0004	355	1	0	0	0	0	1	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	t0005	402	1	0	0	1	0	0	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	t0006	412	1	0	0	0	0	1	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	t0007	412	1	0	1	0	0	0	copy fasta	BPIFB2	chr20	33002704	33028703
BPIFB2_chr20_33002704_33028703	0/0	t0008	412	1	1	0	0	0	0	copy fasta	BPIFB2	chr20	33002704	33028703