JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBL3_chr16_1967053_1987929	0/0	t0069	4355	1	1	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBL3_chr16_1967053_1987929	0/0	t0070	4344	1	1	0	0	0	0	copy fasta	TBL3	chr16	1967053	1987929
TBPL1_chr6_133948224_133995432	0/0	t0001	3639	111	18	19	55	3	16	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/1	t0002	3637	60	2	15	27	7	8	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0003	3637	21	1	2	17	1	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0004	3637	18	17	1	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0005	3645	10	9	1	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0006	3637	8	1	7	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	1/0	t0007	3639	6	0	3	1	0	1	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0008	3643	6	0	4	2	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0009	3641	5	4	1	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0010	3639	5	0	1	1	0	3	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0011	3637	4	0	2	0	1	1	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0012	3637	4	0	0	4	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0013	3677	4	0	2	1	0	1	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0014	3636	4	0	0	4	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0015	3647	3	3	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0016	3637	3	3	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0017	3675	3	2	0	0	0	1	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0018	3639	3	0	1	2	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0019	3636	3	0	0	3	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0020	3639	2	2	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0021	3637	2	1	0	1	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0022	3637	2	2	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0023	3637	2	2	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0024	3637	2	0	2	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0025	3635	2	2	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0026	3673	2	2	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0027	3673	2	0	0	0	1	1	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0028	3637	1	0	0	1	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0029	3649	1	1	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0030	3637	1	0	0	1	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0031	3639	1	0	0	1	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0032	3637	1	1	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0033	3639	1	0	0	1	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0034	3639	1	1	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0035	3639	1	1	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0036	3639	1	1	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0037	3637	1	1	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0038	3635	1	1	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0039	3679	1	0	0	1	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0040	3677	1	0	0	1	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0041	3665	1	1	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0042	3659	1	1	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0043	3665	1	1	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0044	3655	1	1	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0045	3655	1	1	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0046	3649	1	1	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0047	3639	1	0	0	0	0	1	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0048	3637	1	0	1	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432