JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBPL1_chr6_133948224_133995432	0/0	t0049	3639	1	0	0	1	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0050	3639	1	0	0	0	0	1	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0051	3639	1	0	1	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0052	3639	1	0	0	1	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0053	3663	1	1	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0054	3659	1	1	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0055	3647	1	0	0	1	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0056	3639	1	0	0	1	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0057	3665	1	1	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0058	3639	1	1	0	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0059	3673	1	0	1	0	0	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL1_chr6_133948224_133995432	0/0	t0060	3675	1	0	0	0	1	0	copy fasta	TBPL1	chr6	133948224	133995432
TBPL2_chr14_55409210_55445616	0/0	t0001	337	245	65	47	108	6	19	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	1/1	t0002	337	130	16	16	72	8	16	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	t0003	337	9	0	7	0	0	2	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	t0004	337	7	7	0	0	0	0	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	t0005	337	6	6	0	0	0	0	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	t0006	337	3	0	0	0	0	3	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	t0007	337	1	1	0	0	0	0	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	t0008	337	1	0	0	1	0	0	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	t0009	337	1	1	0	0	0	0	copy fasta	TBPL2	chr14	55409210	55445616
TBPL2_chr14_55409210_55445616	0/0	t0010	337	1	0	0	1	0	0	copy fasta	TBPL2	chr14	55409210	55445616
TBP_chr6_170549369_170577859	1/1	t0001	838	366	88	68	159	13	36	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	t0002	837	8	0	1	7	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	t0003	838	3	3	0	0	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	t0004	838	2	0	0	0	1	1	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	t0005	838	2	0	1	0	0	1	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	t0006	838	2	0	2	0	0	0	copy fasta	TBP	chr6	170549369	170577859
TBP_chr6_170549369_170577859	0/0	t0007	838	1	1	0	0	0	0	copy fasta	TBP	chr6	170549369	170577859
TBR1_chr2_161411297_161430870	0/1	t0001	1758	246	39	51	109	17	29	copy fasta	TBR1	chr2	161411297	161430870
TBR1_chr2_161411297_161430870	1/0	t0002	1758	92	40	11	30	1	9	copy fasta	TBR1	chr2	161411297	161430870
TBR1_chr2_161411297_161430870	0/0	t0003	1758	10	0	0	10	0	0	copy fasta	TBR1	chr2	161411297	161430870
TBR1_chr2_161411297_161430870	0/0	t0004	1758	2	2	0	0	0	0	copy fasta	TBR1	chr2	161411297	161430870
TBR1_chr2_161411297_161430870	0/0	t0005	1758	2	2	0	0	0	0	copy fasta	TBR1	chr2	161411297	161430870
TBR1_chr2_161411297_161430870	0/0	t0006	1758	1	0	0	1	0	0	copy fasta	TBR1	chr2	161411297	161430870
TBR1_chr2_161411297_161430870	0/0	t0007	1758	1	0	0	1	0	0	copy fasta	TBR1	chr2	161411297	161430870
TBR1_chr2_161411297_161430870	0/0	t0008	1758	1	1	0	0	0	0	copy fasta	TBR1	chr2	161411297	161430870
TBR1_chr2_161411297_161430870	0/0	t0009	1758	1	0	0	1	0	0	copy fasta	TBR1	chr2	161411297	161430870
TBRG1_chr11_124617864_124640926	1/1	t0001	3909	295	16	70	161	11	35	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0002	3910	26	1	0	25	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0003	3909	24	22	0	2	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0004	3909	21	18	1	0	0	2	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0005	3909	14	0	0	14	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0006	3910	9	1	1	3	2	2	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0007	3910	8	7	1	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0008	3909	8	7	1	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0009	3910	6	0	0	6	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0010	3909	4	0	3	0	0	1	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0011	3910	4	4	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0012	3909	3	3	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926