JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBRG1_chr11_124617864_124640926	0/0	t0013	3910	2	1	1	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0014	3910	2	2	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0015	3909	2	0	0	2	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0016	3909	2	2	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0017	3910	2	2	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0018	3910	2	2	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0019	3910	2	2	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0020	3893	1	1	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0021	3910	1	1	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0022	3909	1	0	1	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0023	3909	1	1	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0024	3950	1	0	0	1	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0025	3909	1	0	0	1	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0026	3909	1	0	0	0	0	1	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0027	3910	1	1	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0028	3909	1	0	0	0	0	1	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0029	3909	1	0	0	1	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0030	3909	1	0	0	0	0	1	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0031	3909	1	0	0	1	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0032	3909	1	0	0	1	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0033	3909	1	0	0	1	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0034	3909	1	0	0	1	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0035	3909	1	0	0	1	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0036	3909	1	1	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0037	3909	1	0	0	0	0	1	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0038	3909	1	1	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0039	3910	1	0	0	1	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0040	3910	1	0	0	0	1	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0041	3910	1	1	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0042	3910	1	1	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0043	3909	1	0	1	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0044	3910	1	1	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG1_chr11_124617864_124640926	0/0	t0045	3910	1	1	0	0	0	0	copy fasta	TBRG1	chr11	124617864	124640926
TBRG4_chr7_45095100_45116697	1/1	t0001	331	230	22	37	135	14	20	copy fasta	TBRG4	chr7	45095100	45116697
TBRG4_chr7_45095100_45116697	0/0	t0002	331	95	63	10	7	0	15	copy fasta	TBRG4	chr7	45095100	45116697
TBRG4_chr7_45095100_45116697	0/0	t0003	331	47	1	12	24	2	8	copy fasta	TBRG4	chr7	45095100	45116697
TBRG4_chr7_45095100_45116697	0/0	t0004	331	13	1	9	3	0	0	copy fasta	TBRG4	chr7	45095100	45116697
TBRG4_chr7_45095100_45116697	0/0	t0005	331	9	0	0	9	0	0	copy fasta	TBRG4	chr7	45095100	45116697
TBRG4_chr7_45095100_45116697	0/0	t0006	331	1	0	0	0	0	1	copy fasta	TBRG4	chr7	45095100	45116697
TBRG4_chr7_45095100_45116697	0/0	t0007	331	1	1	0	0	0	0	copy fasta	TBRG4	chr7	45095100	45116697
TBX10_chr11_67626303_67644763	0/1	t0001	594	145	7	23	83	10	21	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	t0002	594	122	33	16	57	6	10	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	t0003	594	48	28	4	11	2	3	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	t0004	594	22	2	17	3	0	0	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	t0005	594	14	11	1	0	0	2	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	1/0	t0006	594	11	7	3	0	0	0	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	t0007	594	7	1	6	0	0	0	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	t0008	594	5	5	0	0	0	0	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	t0009	594	1	0	0	1	0	0	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	t0010	594	1	0	1	0	0	0	copy fasta	TBX10	chr11	67626303	67644763