JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBX10_chr11_67626303_67644763	0/0	t0011	594	1	0	0	1	0	0	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	t0012	594	1	1	0	0	0	0	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	t0013	594	1	0	1	0	0	0	copy fasta	TBX10	chr11	67626303	67644763
TBX10_chr11_67626303_67644763	0/0	t0014	594	1	1	0	0	0	0	copy fasta	TBX10	chr11	67626303	67644763
TBX15_chr1_118878047_118993343	0/1	t0001	2232	191	29	32	102	6	21	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	1/0	t0002	2234	87	18	16	33	2	17	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0003	2233	16	0	6	8	2	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0004	2231	11	8	1	2	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0005	2229	7	7	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0006	2232	4	4	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0007	2235	4	2	0	2	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0008	2232	4	0	0	3	0	1	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0009	2232	4	0	1	3	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0010	2232	4	4	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0011	2229	3	3	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0012	2229	2	2	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0013	2230	2	2	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0014	2232	2	2	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0015	2233	1	1	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0016	2236	1	0	1	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0017	2237	1	1	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0018	2231	1	1	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0019	2234	1	1	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0020	2235	1	1	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0021	2234	1	1	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0022	2235	1	1	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0023	2232	1	0	0	1	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0024	2232	1	0	0	1	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0025	2229	1	1	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0026	2231	1	1	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0027	2255	1	0	0	0	0	1	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0028	2232	1	0	0	0	0	1	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0029	2232	1	1	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0030	2233	1	0	0	1	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0031	2233	1	1	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0032	2233	1	1	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0033	2233	1	1	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0034	2231	1	1	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0035	2230	1	1	0	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0036	2228	1	0	1	0	0	0	copy fasta	TBX15	chr1	118878047	118993343
TBX15_chr1_118878047_118993343	0/0	t0037	2232	1	0	0	0	0	1	copy fasta	TBX15	chr1	118878047	118993343
TBX18_chr6_84727496_84769598	0/0	t0001	4607	93	1	15	62	1	14	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0002	4607	71	0	21	45	2	3	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/1	t0003	4605	63	9	14	17	5	17	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	1/0	t0004	4607	55	6	12	29	5	2	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0005	4609	21	7	5	5	2	2	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0006	4607	14	10	3	0	1	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0007	4609	12	11	1	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0008	4609	11	11	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0009	4609	10	10	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598