JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBX18_chr6_84727496_84769598	0/0	t0010	4609	6	6	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0011	4607	6	5	1	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0012	4605	6	6	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0013	4607	4	0	0	4	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0014	4609	3	3	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0015	4607	2	0	0	0	0	2	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0016	4607	2	0	0	2	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0017	4605	2	1	1	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0018	4607	2	0	0	2	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0019	4607	1	1	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0020	4607	1	0	0	1	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0021	4609	1	1	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0022	4609	1	1	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0023	4609	1	1	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0024	4605	1	0	0	1	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0025	4607	1	0	0	1	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0026	4607	1	0	0	1	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0027	4607	1	0	0	0	0	1	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0028	4607	1	0	0	1	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0029	4607	1	0	0	1	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0030	4607	1	1	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0031	4607	1	1	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0032	4607	1	0	0	1	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0033	4607	1	0	0	1	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0034	4607	1	1	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0035	4607	1	0	0	1	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0036	4607	1	0	0	0	0	1	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0037	4605	1	0	1	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0038	4605	1	0	0	1	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX18_chr6_84727496_84769598	0/0	t0039	4607	1	1	0	0	0	0	copy fasta	TBX18	chr6	84727496	84769598
TBX19_chr1_168275877_168319426	0/1	t0001	1635	151	27	28	72	4	19	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	1/0	t0002	1639	104	19	24	43	5	12	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0003	1639	72	6	12	42	3	9	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0004	1635	14	14	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0005	1635	7	7	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0006	1639	6	3	2	1	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0007	1635	4	4	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0008	1639	4	4	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0009	1635	2	2	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0010	1639	2	2	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0011	1635	2	0	0	0	0	2	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0012	1635	2	2	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0013	1639	2	0	0	2	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0014	1635	1	0	0	0	0	1	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0015	1635	1	0	0	0	0	1	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0016	1635	1	1	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0017	1639	1	0	0	1	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0018	1635	1	0	0	1	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0019	1639	1	0	0	1	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0020	1639	1	0	0	1	0	0	copy fasta	TBX19	chr1	168275877	168319426