JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBX19_chr1_168275877_168319426	0/0	t0021	1635	1	1	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0022	1635	1	1	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX19_chr1_168275877_168319426	0/0	t0023	1639	1	1	0	0	0	0	copy fasta	TBX19	chr1	168275877	168319426
TBX1_chr22_19755778_19772334	1/1	t0001	534	389	81	75	176	15	40	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	t0002	534	20	17	3	0	0	0	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	t0003	535	17	1	0	14	0	2	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	t0004	534	3	0	2	0	1	0	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	t0005	534	1	1	0	0	0	0	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	t0006	534	1	0	0	0	0	1	copy fasta	TBX1	chr22	19755778	19772334
TBX1_chr22_19755778_19772334	0/0	t0007	534	1	0	0	0	0	1	copy fasta	TBX1	chr22	19755778	19772334
TBX20_chr7_35197430_35259100	1/1	t0001	481	175	52	30	73	3	15	copy fasta	TBX20	chr7	35197430	35259100
TBX20_chr7_35197430_35259100	0/0	t0002	481	116	25	30	45	3	13	copy fasta	TBX20	chr7	35197430	35259100
TBX20_chr7_35197430_35259100	0/0	t0003	481	7	7	0	0	0	0	copy fasta	TBX20	chr7	35197430	35259100
TBX20_chr7_35197430_35259100	0/0	t0004	481	2	2	0	0	0	0	copy fasta	TBX20	chr7	35197430	35259100
TBX20_chr7_35197430_35259100	0/0	t0005	481	1	0	0	1	0	0	copy fasta	TBX20	chr7	35197430	35259100
TBX20_chr7_35197430_35259100	0/0	t0006	481	1	0	0	1	0	0	copy fasta	TBX20	chr7	35197430	35259100
TBX21_chr17_47728236_47751122	1/0	t0001	976	297	61	51	151	7	26	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/1	t0002	976	38	2	11	14	2	8	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	t0003	976	34	12	6	5	2	9	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	t0004	977	6	1	4	0	1	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	t0005	976	5	0	3	0	2	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	t0006	976	5	5	0	0	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	t0007	977	2	2	0	0	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	t0008	976	1	0	1	0	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	t0009	976	1	1	0	0	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	t0010	976	1	0	1	0	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	t0011	976	1	1	0	0	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	t0012	976	1	1	0	0	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	t0013	976	1	0	1	0	0	0	copy fasta	TBX21	chr17	47728236	47751122
TBX21_chr17_47728236_47751122	0/0	t0014	976	1	0	0	0	0	1	copy fasta	TBX21	chr17	47728236	47751122
TBX22_chrX_80009753_80036774	0/1	t0001	801	311	69	58	144	11	28	copy fasta	TBX22	chrX	80009753	80036774
TBX22_chrX_80009753_80036774	0/0	t0002	801	9	8	1	0	0	0	copy fasta	TBX22	chrX	80009753	80036774
TBX22_chrX_80009753_80036774	0/0	t0003	801	3	3	0	0	0	0	copy fasta	TBX22	chrX	80009753	80036774
TBX22_chrX_80009753_80036774	0/0	t0004	801	1	0	0	1	0	0	copy fasta	TBX22	chrX	80009753	80036774
TBX22_chrX_80009753_80036774	0/0	t0005	801	1	0	1	0	0	0	copy fasta	TBX22	chrX	80009753	80036774
TBX2_chr17_61394843_61414466	1/0	t0001	1295	110	23	22	48	5	11	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	t0002	1296	106	3	17	67	6	13	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/1	t0003	1296	55	14	20	0	6	14	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	t0004	1294	49	34	2	12	0	1	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	t0005	1295	42	2	6	33	1	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	t0006	1295	24	0	4	15	0	5	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	t0007	1296	11	10	1	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	t0008	1295	11	0	1	10	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	t0009	1296	4	0	3	0	0	1	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	t0010	1296	4	0	0	2	0	2	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	t0011	1295	3	0	0	3	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	t0012	1296	3	3	0	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	t0013	1295	3	0	1	1	0	1	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	t0014	1294	3	2	0	1	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	t0015	1279	2	0	0	2	0	0	copy fasta	TBX2	chr17	61394843	61414466