JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBX2_chr17_61394843_61414466	0/0	t0016	1296	2	0	2	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	t0017	1317	2	2	0	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	t0018	1295	1	1	0	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	t0019	1296	1	1	0	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	t0020	1296	1	0	1	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX2_chr17_61394843_61414466	0/0	t0021	1295	1	1	0	0	0	0	copy fasta	TBX2	chr17	61394843	61414466
TBX3_chr12_114665255_114689175	0/0	t0001	2566	34	4	10	12	5	3	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0002	2566	32	1	3	21	1	6	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0003	2565	29	1	14	9	3	2	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0004	2562	20	0	0	20	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0005	2566	15	0	2	10	0	3	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0006	2563	13	2	1	9	0	1	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0007	2563	11	1	3	4	1	2	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0008	2562	10	1	0	9	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0009	2562	9	0	0	8	0	1	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0010	2561	8	7	1	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0011	2569	8	4	1	0	0	3	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0012	2564	7	2	2	0	2	1	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0013	2564	7	6	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0014	2566	7	2	3	0	0	2	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0015	2562	6	1	0	5	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/1	t0016	2565	6	0	3	1	0	1	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0017	2565	6	0	1	5	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0018	2566	6	0	3	2	0	1	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0019	2561	5	2	3	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0020	2563	5	4	1	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0021	2564	5	0	0	4	0	1	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0022	2566	5	0	2	2	0	1	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0023	2559	4	0	0	2	0	2	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0024	2561	4	4	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0025	2563	4	4	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0026	2563	4	0	0	4	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0027	2564	4	0	0	4	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0028	2564	4	4	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0029	2564	4	4	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0030	2566	4	0	1	2	0	1	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0031	2566	4	0	1	3	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0032	2566	4	0	0	4	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0033	2568	4	0	0	4	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0034	2570	4	2	1	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0035	2562	3	1	0	1	0	1	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0036	2563	3	2	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0037	2563	3	0	0	2	1	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0038	2564	3	0	0	3	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0039	2564	3	2	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0040	2564	3	3	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0041	2565	3	0	2	0	1	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0042	2566	3	0	0	2	0	1	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0043	2566	3	3	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0044	2571	3	1	1	0	0	1	copy fasta	TBX3	chr12	114665255	114689175