JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBX3_chr12_114665255_114689175	0/0	t0095	2564	1	0	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0096	2564	1	0	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0097	2564	1	1	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0098	2564	1	0	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0099	2565	1	1	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0100	2565	1	0	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0101	2565	1	0	1	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0102	2565	1	1	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0103	2566	1	0	0	0	0	1	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0104	2566	1	0	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0105	2566	1	0	0	0	0	1	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0106	2566	1	0	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0107	2566	1	0	0	0	0	1	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0108	2566	1	0	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0109	2567	1	0	1	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0110	2567	1	0	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0111	2568	1	0	0	0	1	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0112	2568	1	0	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0113	2568	1	1	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0114	2568	1	0	0	1	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0115	2569	1	1	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0116	2569	1	1	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0117	2569	1	0	1	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0118	2570	1	1	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0119	2571	1	1	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0120	2571	1	0	1	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0121	2571	1	0	1	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0122	2571	1	0	0	0	0	1	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0123	2571	1	0	0	0	1	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0124	2573	1	1	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0125	2574	1	1	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX3_chr12_114665255_114689175	0/0	t0126	2578	1	1	0	0	0	0	copy fasta	TBX3	chr12	114665255	114689175
TBX4_chr17_61447422_61490110	0/0	t0001	1752	78	10	7	48	3	10	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0002	1754	51	1	15	31	1	3	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0003	1752	33	1	13	15	0	4	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0004	1756	17	0	5	12	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0005	1754	16	6	1	9	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0006	1766	16	3	3	3	1	6	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	1/1	t0007	1754	14	3	3	2	3	1	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0008	1768	12	4	2	5	0	1	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0009	1756	10	0	1	8	0	1	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0010	1756	8	0	1	4	0	3	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0011	1766	8	0	0	8	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0012	1750	7	3	0	4	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0013	1754	6	0	1	3	1	1	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0014	1756	6	1	2	1	0	2	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0015	1768	6	5	1	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0016	1770	5	2	1	0	0	2	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0017	1754	4	0	2	1	1	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0018	1764	4	4	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110