JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBX4_chr17_61447422_61490110	0/0	t0019	1766	4	0	0	3	0	1	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0020	1762	4	4	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0021	1772	4	0	3	0	1	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0022	1756	3	0	0	3	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0023	1750	3	2	1	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0024	1758	3	0	1	0	1	1	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0025	1770	3	0	3	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0026	1762	3	2	1	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0027	1764	3	3	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0028	1770	3	1	1	1	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0029	1770	3	3	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0030	1770	3	3	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0031	1750	2	1	1	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0032	1752	2	2	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0033	1760	2	0	2	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0034	1762	2	0	1	0	1	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0035	1758	2	2	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0036	1758	2	0	0	2	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0037	1758	2	2	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0038	1760	2	1	1	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0039	1768	2	0	0	2	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0040	1770	2	0	1	1	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0041	1772	2	0	0	1	1	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0042	1768	2	2	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0043	1770	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0044	1748	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0045	1748	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0046	1756	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0047	1752	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0048	1750	1	0	0	1	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0049	1758	1	0	0	0	0	1	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0050	1752	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0051	1750	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0052	1754	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0053	1755	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0054	1754	1	0	0	1	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0055	1758	1	0	1	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0056	1757	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0057	1760	1	0	0	1	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0058	1762	1	0	0	0	1	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0059	1764	1	0	0	0	0	1	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0060	1766	1	0	0	0	0	1	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0061	1759	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0062	1756	1	0	0	1	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0063	1760	1	0	1	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0064	1764	1	0	1	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0065	1778	1	0	0	1	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0066	1768	1	0	1	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0067	1768	1	0	0	0	1	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0068	1764	1	0	0	1	0	0	copy fasta	TBX4	chr17	61447422	61490110