Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BPIFB3_chr20_33048903_33078847	1/1	t0001	320	296	78	59	120	6	31	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	t0002	320	77	12	19	29	6	11	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB3_chr20_33048903_33078847	0/0	t0003	78	1	0	0	1	0	0	copy fasta	BPIFB3	chr20	33048903	33078847
BPIFB4_chr20_33074643_33116751	1/1	t0001	499	341	93	62	128	14	42	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	t0002	499	2	0	2	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFB4_chr20_33074643_33116751	0/0	t0003	499	1	1	0	0	0	0	copy fasta	BPIFB4	chr20	33074643	33116751
BPIFC_chr22_32408845_32469446	1/1	t0001	620	288	49	52	149	6	30	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	t0002	620	119	29	27	35	12	16	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	t0003	620	13	12	1	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	t0004	620	1	1	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPIFC_chr22_32408845_32469446	0/0	t0005	620	1	1	0	0	0	0	copy fasta	BPIFC	chr22	32408845	32469446
BPI_chr20_38299156_38342505	0/0	t0001	390	237	68	41	95	10	23	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	1/1	t0002	390	165	21	30	89	8	15	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	t0003	389	20	0	1	13	0	6	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	t0004	390	2	2	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	t0005	390	1	1	0	0	0	0	copy fasta	BPI	chr20	38299156	38342505
BPI_chr20_38299156_38342505	0/0	t0006	390	1	0	0	1	0	0	copy fasta	BPI	chr20	38299156	38342505
BPNT1_chr1_220052482_220094788	0/0	t0001	1474	162	47	36	59	7	13	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	1/0	t0002	1474	122	18	15	71	3	14	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/1	t0003	1473	68	1	17	32	6	11	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	t0004	1474	33	5	1	25	0	2	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	t0005	1474	10	10	0	0	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	t0006	1474	6	0	4	0	0	2	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	t0007	1474	4	1	3	0	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	t0008	1474	3	3	0	0	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	t0009	1474	2	1	1	0	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	t0010	1472	2	1	1	0	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	t0011	1474	2	2	0	0	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	t0012	1474	1	1	0	0	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	t0013	1474	1	1	0	0	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	t0014	1474	1	0	0	0	0	1	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	t0015	1474	1	1	0	0	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	t0016	1474	1	0	0	1	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	t0017	1474	1	0	0	1	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	t0018	1472	1	1	0	0	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	t0019	1474	1	0	0	1	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	t0020	1473	1	0	0	0	0	1	copy fasta	BPNT1	chr1	220052482	220094788
BPNT1_chr1_220052482_220094788	0/0	t0021	1474	1	1	0	0	0	0	copy fasta	BPNT1	chr1	220052482	220094788
BPNT2_chr8_56952931_56998867	0/1	t0001	6145	143	36	25	59	8	14	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0002	6145	54	6	9	32	1	6	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0003	6145	53	0	2	44	1	6	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	1/0	t0004	6145	41	7	4	22	0	7	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0005	6145	6	0	6	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0006	6138	5	4	1	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0007	6145	5	0	0	5	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0008	6144	5	0	0	5	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0009	6145	4	4	0	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0010	6145	4	4	0	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0011	6145	3	0	3	0	0	0	copy fasta	BPNT2	chr8	56952931	56998867
BPNT2_chr8_56952931_56998867	0/0	t0012	6145	3	0	0	0	1	2	copy fasta	BPNT2	chr8	56952931	56998867