JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBX4_chr17_61447422_61490110	0/0	t0069	1768	1	0	0	1	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0070	1760	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0071	1766	1	0	1	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0072	1774	1	0	1	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0073	1762	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0074	1764	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0075	1773	1	0	0	1	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0076	1768	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0077	1772	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0078	1780	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0079	1776	1	0	0	0	0	1	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0080	1768	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0081	1766	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0082	1770	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0083	1774	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0084	1770	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0085	1772	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0086	1778	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0087	1770	1	1	0	0	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX4_chr17_61447422_61490110	0/0	t0088	1764	1	0	0	1	0	0	copy fasta	TBX4	chr17	61447422	61490110
TBX5_chr12_114348911_114411144	0/0	t0001	2176	142	42	24	51	9	16	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/1	t0002	2176	54	4	10	30	0	9	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0003	2176	42	0	0	41	0	1	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	1/0	t0004	2177	35	5	6	6	4	13	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0005	2177	24	1	11	12	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0006	2176	17	6	8	3	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0007	2177	12	9	3	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0008	2176	9	0	5	0	1	3	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0009	2177	5	1	2	0	1	1	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0010	2176	5	0	0	5	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0011	2176	4	0	1	0	0	3	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0012	2176	4	3	1	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0013	2176	2	0	0	1	0	1	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0014	2176	2	1	0	0	1	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0015	2176	2	2	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0016	2180	2	2	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0017	2180	2	2	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0018	2177	1	1	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0019	2176	1	1	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0020	2176	1	0	1	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0021	2176	1	0	1	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0022	2176	1	1	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0023	2176	1	0	0	1	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0024	2176	1	0	0	1	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0025	2176	1	1	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0026	2177	1	1	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0027	2176	1	1	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0028	2177	1	1	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0029	2176	1	0	1	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0030	2177	1	0	1	0	0	0	copy fasta	TBX5	chr12	114348911	114411144