JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBX5_chr12_114348911_114411144	0/0	t0031	2176	1	0	0	1	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0032	2176	1	1	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0033	2177	1	0	0	1	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0034	2176	1	1	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0035	2178	1	1	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0036	2176	1	0	0	0	0	1	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0037	2177	1	0	0	1	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0038	2188	1	0	0	1	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0039	2176	1	0	1	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0040	2176	1	0	0	1	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0041	2176	1	0	1	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0042	2180	1	1	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0043	2180	1	1	0	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX5_chr12_114348911_114411144	0/0	t0044	2178	1	0	1	0	0	0	copy fasta	TBX5	chr12	114348911	114411144
TBX6_chr16_30080793_30096924	1/1	t0001	533	376	83	71	170	10	40	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	t0002	533	3	0	0	3	0	0	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	t0003	533	2	0	2	0	0	0	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	t0004	533	1	1	0	0	0	0	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	t0005	533	1	0	1	0	0	0	copy fasta	TBX6	chr16	30080793	30096924
TBX6_chr16_30080793_30096924	0/0	t0006	533	1	0	0	1	0	0	copy fasta	TBX6	chr16	30080793	30096924
TBXA2R_chr19_3589507_3611875	1/0	t0001	1611	207	21	33	121	6	25	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/1	t0002	1612	63	23	15	13	4	7	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0003	1611	31	12	9	2	3	5	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0004	1612	24	1	3	15	0	5	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0005	1611	22	0	9	8	0	5	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0006	1611	8	0	0	8	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0007	1611	7	0	0	7	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0008	1611	6	5	1	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0009	1613	5	5	0	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0010	1612	5	5	0	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0011	1612	5	4	1	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0012	1611	5	2	1	0	2	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0013	1613	4	0	1	2	0	1	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0014	1611	4	4	0	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0015	1611	3	3	0	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0016	1612	3	0	2	0	1	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0017	1612	3	3	0	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0018	1612	2	0	0	2	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0019	1611	2	0	0	2	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0020	1611	2	0	2	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0021	1612	2	1	1	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0022	1612	1	1	0	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0023	1611	1	0	0	1	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0024	1611	1	0	0	1	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0025	1600	1	0	0	1	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0026	1611	1	0	0	1	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0027	1612	1	1	0	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0028	1612	1	0	1	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0029	1613	1	1	0	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0030	1612	1	1	0	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875