JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TBXA2R_chr19_3589507_3611875	0/0	t0031	1612	1	1	0	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0032	1612	1	0	1	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0033	1611	1	1	0	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0034	1612	1	1	0	0	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0035	1611	1	0	0	1	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXA2R_chr19_3589507_3611875	0/0	t0036	1612	1	0	0	1	0	0	copy fasta	TBXA2R	chr19	3589507	3611875
TBXAS1_chr7_139824264_140025293	1/1	t0001	322	265	85	56	86	6	30	copy fasta	TBXAS1	chr7	139824264	140025293
TBXAS1_chr7_139824264_140025293	0/0	t0002	322	5	5	0	0	0	0	copy fasta	TBXAS1	chr7	139824264	140025293
TBXT_chr6_166152656_166172851	0/0	t0001	920	189	49	28	91	5	16	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	t0002	920	109	4	23	63	6	13	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	1/0	t0003	920	66	10	19	21	6	9	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	t0004	920	33	26	2	0	0	5	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	t0005	920	26	2	3	20	1	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/1	t0006	920	19	0	5	11	0	2	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	t0007	920	9	0	0	9	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	t0008	920	3	0	0	3	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	t0009	920	2	2	0	0	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	t0010	920	1	0	0	0	0	1	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	t0011	920	1	1	0	0	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	t0012	920	1	1	0	0	0	0	copy fasta	TBXT	chr6	166152656	166172851
TBXT_chr6_166152656_166172851	0/0	t0013	920	1	1	0	0	0	0	copy fasta	TBXT	chr6	166152656	166172851
TC2N_chr14_91774746_91872536	0/1	t0001	3686	107	20	27	41	6	12	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0002	3686	105	13	25	57	3	7	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0003	3686	33	5	1	14	3	10	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0004	3686	14	0	0	10	0	4	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0005	3686	13	12	1	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0006	3686	11	11	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	1/0	t0007	3686	7	6	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0008	3686	7	6	1	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0009	3686	7	6	1	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0010	3686	5	3	0	0	0	2	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0011	3686	3	0	0	3	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0012	3686	3	0	0	3	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0013	4004	2	2	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0014	3686	2	0	0	0	2	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0015	3686	1	1	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0016	3686	1	0	1	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0017	4017	1	1	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0018	4017	1	1	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0019	4018	1	1	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0020	4004	1	1	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0021	3686	1	0	0	1	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0022	3686	1	0	0	0	0	1	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0023	3686	1	0	0	1	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0024	3686	1	0	0	1	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0025	4005	1	1	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0026	3686	1	1	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0027	3686	1	1	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0028	3686	1	1	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0029	3686	1	1	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536