JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TC2N_chr14_91774746_91872536	0/0	t0030	3686	1	1	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0031	3686	1	1	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0032	3686	1	0	0	1	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0033	3686	1	0	0	1	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0034	3686	1	0	0	1	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0035	3686	1	1	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0036	3686	1	0	1	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0037	3686	1	0	0	1	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0038	3686	1	0	0	1	0	0	copy fasta	TC2N	chr14	91774746	91872536
TC2N_chr14_91774746_91872536	0/0	t0039	4000	1	1	0	0	0	0	copy fasta	TC2N	chr14	91774746	91872536
TCAF1_chr7_143846375_143907176	0/0	t0001	2989	67	9	20	32	3	3	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0002	2989	28	0	0	28	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0003	2989	24	20	3	0	1	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/1	t0004	2989	21	1	2	14	0	3	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0005	2989	14	0	4	9	0	1	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0006	2989	12	9	2	0	1	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0007	2989	12	0	2	9	1	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0008	2989	11	7	0	4	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0009	2989	9	1	2	5	1	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0010	2989	6	0	4	2	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0011	2989	6	0	2	3	1	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0012	2989	4	0	1	3	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0013	2989	4	4	0	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0014	2989	3	3	0	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0015	2989	2	1	1	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0016	2989	2	0	0	2	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0017	2989	2	0	0	1	0	1	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0018	2989	2	1	1	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0019	2989	2	2	0	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0020	2989	2	1	0	1	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0021	2989	2	0	0	2	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0022	2989	2	0	0	0	2	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0023	2989	1	0	0	0	0	1	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0024	2989	1	0	0	0	0	1	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0025	2989	1	1	0	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0026	2989	1	0	0	1	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0027	2989	1	1	0	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0028	2989	1	1	0	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0029	2989	1	0	0	1	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0030	2989	1	1	0	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0031	2989	1	0	0	1	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0032	2989	1	0	1	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0033	2989	1	0	0	1	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0034	2989	1	0	0	1	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0035	2989	1	0	1	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0036	2989	1	1	0	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0037	2989	1	1	0	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0038	2989	1	1	0	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0039	2989	1	1	0	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAF1_chr7_143846375_143907176	0/0	t0040	2989	1	1	0	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176