JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TCAF1_chr7_143846375_143907176	1/0	t0041	2989	1	0	0	0	0	0	copy fasta	TCAF1	chr7	143846375	143907176
TCAIM_chr3_44333766_44414448	0/1	t0001	1880	155	45	36	46	8	19	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	1/0	t0002	1880	29	20	7	0	1	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	t0003	1881	23	4	6	5	3	5	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	t0004	1864	7	7	0	0	0	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	t0005	1880	6	6	0	0	0	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	t0006	1880	5	0	0	5	0	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	t0007	1881	4	4	0	0	0	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	t0008	1881	4	1	3	0	0	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	t0009	1880	2	0	2	0	0	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	t0010	1881	2	2	0	0	0	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	t0011	1880	2	0	0	2	0	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	t0012	1881	1	0	0	0	0	1	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	t0013	1880	1	0	1	0	0	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	t0014	1880	1	1	0	0	0	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	t0015	1880	1	1	0	0	0	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	t0016	1880	1	0	0	1	0	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	t0017	1880	1	0	0	0	0	1	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	t0018	1881	1	0	1	0	0	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	t0019	1880	1	0	0	1	0	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAIM_chr3_44333766_44414448	0/0	t0020	1880	1	1	0	0	0	0	copy fasta	TCAIM	chr3	44333766	44414448
TCAP_chr17_39660349_39671554	1/1	t0001	457	379	84	77	158	17	41	copy fasta	TCAP	chr17	39660349	39671554
TCAP_chr17_39660349_39671554	0/0	t0002	457	3	3	0	0	0	0	copy fasta	TCAP	chr17	39660349	39671554
TCAP_chr17_39660349_39671554	0/0	t0003	457	1	1	0	0	0	0	copy fasta	TCAP	chr17	39660349	39671554
TCAP_chr17_39660349_39671554	0/0	t0004	457	1	0	0	0	0	1	copy fasta	TCAP	chr17	39660349	39671554
TCAP_chr17_39660349_39671554	0/0	t0005	457	1	0	1	0	0	0	copy fasta	TCAP	chr17	39660349	39671554
TCAP_chr17_39660349_39671554	0/0	t0006	457	1	0	0	0	1	0	copy fasta	TCAP	chr17	39660349	39671554
TCEA1_chr8_53961556_54027448	0/1	t0001	1875	127	14	21	78	2	11	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	1/0	t0002	1872	98	15	25	42	4	11	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	t0003	1872	51	37	13	1	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	t0004	1872	17	17	0	0	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	t0005	1872	4	4	0	0	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	t0006	1875	2	0	0	1	0	1	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	t0007	1875	2	0	0	2	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	t0008	1872	2	0	0	2	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	t0009	1875	1	1	0	0	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	t0010	1875	1	0	0	1	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	t0011	1872	1	0	0	1	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	t0012	1872	1	1	0	0	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	t0013	1872	1	0	0	0	0	1	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	t0014	1872	1	1	0	0	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	t0015	1860	1	0	1	0	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	t0016	1872	1	0	0	0	0	1	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	t0017	1872	1	0	0	0	0	1	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	t0018	1875	1	0	0	1	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA1_chr8_53961556_54027448	0/0	t0019	1875	1	0	0	1	0	0	copy fasta	TCEA1	chr8	53961556	54027448
TCEA2_chr20_64058198_64077347	1/1	t0001	283	378	91	79	147	16	43	copy fasta	TCEA2	chr20	64058198	64077347
TCEA2_chr20_64058198_64077347	0/0	t0002	283	4	3	1	0	0	0	copy fasta	TCEA2	chr20	64058198	64077347
TCEA2_chr20_64058198_64077347	0/0	t0003	283	1	0	0	0	0	1	copy fasta	TCEA2	chr20	64058198	64077347
TCEA2_chr20_64058198_64077347	0/0	t0004	283	1	0	0	1	0	0	copy fasta	TCEA2	chr20	64058198	64077347