JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TCEAL9_chrX_103351506_103363462	1/1	t0001	714	314	62	60	147	13	30	copy fasta	TCEAL9	chrX	103351506	103363462
TCEAL9_chrX_103351506_103363462	0/0	t0002	714	7	7	0	0	0	0	copy fasta	TCEAL9	chrX	103351506	103363462
TCEAL9_chrX_103351506_103363462	0/0	t0003	714	3	3	0	0	0	0	copy fasta	TCEAL9	chrX	103351506	103363462
TCEAL9_chrX_103351506_103363462	0/0	t0004	712	2	2	0	0	0	0	copy fasta	TCEAL9	chrX	103351506	103363462
TCEAL9_chrX_103351506_103363462	0/0	t0005	716	1	0	0	0	0	1	copy fasta	TCEAL9	chrX	103351506	103363462
TCEAL9_chrX_103351506_103363462	0/0	t0006	714	1	0	0	1	0	0	copy fasta	TCEAL9	chrX	103351506	103363462
TCEAL9_chrX_103351506_103363462	0/0	t0007	714	1	0	0	0	0	1	copy fasta	TCEAL9	chrX	103351506	103363462
TCEAL9_chrX_103351506_103363462	0/0	t0008	714	1	1	0	0	0	0	copy fasta	TCEAL9	chrX	103351506	103363462
TCEAL9_chrX_103351506_103363462	0/0	t0009	714	1	1	0	0	0	0	copy fasta	TCEAL9	chrX	103351506	103363462
TCEANC2_chr1_54048608_54111082	0/1	t0001	9803	110	8	22	63	5	11	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0002	9806	71	5	26	32	3	5	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0003	9806	29	0	2	26	0	1	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0004	9809	25	16	3	5	0	1	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0005	9806	14	0	0	14	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0006	9807	10	9	1	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0007	9806	9	9	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0008	9806	5	5	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0009	9806	5	5	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0010	9806	4	4	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	1/0	t0011	9803	4	0	0	1	2	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0012	9802	3	2	1	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0013	9806	3	3	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0014	9806	3	0	0	3	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0015	9806	3	0	0	3	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0016	9808	3	3	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0017	9807	3	0	0	3	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0018	9807	2	0	2	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0019	9803	2	0	1	0	0	1	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0020	9806	2	2	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0021	9806	2	1	1	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0022	9802	2	2	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0023	9808	2	2	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0024	9806	1	0	1	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0025	9806	1	0	0	1	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0026	9803	1	0	1	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0027	9803	1	0	0	0	0	1	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0028	9803	1	0	0	1	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0029	9803	1	0	0	0	0	1	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0030	9803	1	0	1	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0031	9806	1	0	0	0	0	1	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0032	9802	1	1	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0033	9803	1	0	1	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0034	9803	1	0	0	1	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0035	9807	1	1	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0036	9803	1	1	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0037	9807	1	1	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0038	9802	1	1	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0039	9806	1	1	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0040	9807	1	0	0	1	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0041	9806	1	0	1	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082