JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TCEANC2_chr1_54048608_54111082	0/0	t0042	9807	1	1	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0043	9806	1	0	0	1	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0044	9807	1	0	0	1	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0045	9807	1	0	0	0	0	1	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0046	9809	1	1	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0047	9808	1	1	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0048	9808	1	1	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0049	9807	1	1	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0050	9808	1	1	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0051	9806	1	0	0	1	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0052	9806	1	0	0	1	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0053	9806	1	1	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0054	9806	1	0	0	1	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0055	9806	1	1	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0056	9810	1	1	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0057	9809	1	0	0	1	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0058	9809	1	1	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0059	9809	1	1	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0060	9809	1	1	0	0	0	0	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC2_chr1_54048608_54111082	0/0	t0061	9809	1	0	0	0	0	1	copy fasta	TCEANC2	chr1	54048608	54111082
TCEANC_chrX_13648141_13670409	1/0	t0001	2196	85	13	20	37	5	9	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/1	t0002	2196	80	20	13	40	0	6	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0003	2196	77	9	10	43	5	10	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0004	2196	19	0	0	19	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0005	2196	11	11	0	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0006	2196	9	7	2	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0007	2196	8	5	3	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0008	2196	5	0	3	2	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0009	2196	3	0	0	3	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0010	2196	3	0	3	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0011	2196	3	3	0	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0012	2196	2	2	0	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0013	2196	2	0	1	0	1	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0014	2196	2	0	0	0	0	2	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0015	2196	2	2	0	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0016	2196	1	1	0	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0017	2196	1	1	0	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0018	2196	1	1	0	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0019	2196	1	1	0	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0020	2196	1	0	0	1	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0021	2196	1	0	0	0	0	1	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0022	2196	1	0	0	0	0	1	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0023	2196	1	0	0	0	0	1	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0024	2196	1	1	0	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0025	2196	1	1	0	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0026	2198	1	0	0	1	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0027	2197	1	0	0	1	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCEANC_chrX_13648141_13670409	0/0	t0028	2196	1	0	1	0	0	0	copy fasta	TCEANC	chrX	13648141	13670409
TCERG1L_chr10_131087391_131316721	0/0	t0001	858	74	18	13	33	6	4	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0002	858	68	31	10	18	0	9	copy fasta	TCERG1L	chr10	131087391	131316721