JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TCERG1L_chr10_131087391_131316721	1/1	t0003	858	47	1	11	26	1	6	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0004	858	29	12	10	4	2	1	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0005	858	26	0	6	11	3	6	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0006	858	22	1	4	12	2	3	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0007	858	19	13	2	1	2	1	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0008	858	9	3	5	0	0	1	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0009	858	8	0	0	6	0	2	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0010	858	5	3	1	0	0	1	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0011	858	4	0	1	3	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0012	858	2	2	0	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0013	858	1	0	1	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0014	858	1	0	0	1	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0015	858	1	0	1	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0016	858	1	0	0	1	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0017	858	1	0	1	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0018	858	1	1	0	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0019	858	1	0	1	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0020	858	1	0	0	1	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0021	858	1	0	0	1	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0022	858	1	1	0	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1L_chr10_131087391_131316721	0/0	t0023	858	1	0	1	0	0	0	copy fasta	TCERG1L	chr10	131087391	131316721
TCERG1_chr5_146442333_146516961	0/0	t0001	1341	161	45	26	67	6	17	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/1	t0002	1341	94	1	14	64	5	9	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	t0003	1341	21	10	6	0	0	5	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	1/0	t0004	1337	17	7	8	0	0	1	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	t0005	1338	10	9	1	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	t0006	1338	4	4	0	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	t0007	1338	3	3	0	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	t0008	1340	3	2	1	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	t0009	1341	2	2	0	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	t0010	1341	2	2	0	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	t0011	1341	1	1	0	0	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	t0012	1341	1	0	0	1	0	0	copy fasta	TCERG1	chr5	146442333	146516961
TCERG1_chr5_146442333_146516961	0/0	t0013	1341	1	0	0	0	1	0	copy fasta	TCERG1	chr5	146442333	146516961
TCF12_chr15_56913644_57294853	0/0	t0001	3991	94	39	11	38	3	3	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0002	3994	64	0	15	35	2	12	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0003	3994	59	3	18	28	4	6	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/1	t0004	3991	15	0	13	0	0	1	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0005	3991	15	15	0	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0006	3991	13	0	3	4	0	6	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0007	3996	11	0	0	11	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0008	3993	6	6	0	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	1/0	t0009	3994	6	4	1	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0010	3991	4	0	4	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0011	3996	4	3	1	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0012	3991	3	3	0	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0013	3994	3	0	0	3	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0014	3991	2	0	0	2	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0015	3991	2	0	0	0	0	2	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0016	3994	2	0	0	2	0	0	copy fasta	TCF12	chr15	56913644	57294853