JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TCF12_chr15_56913644_57294853	0/0	t0017	3994	2	0	0	2	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0018	3994	2	0	1	0	0	1	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0019	3991	2	0	0	2	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0020	3993	2	2	0	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0021	3991	1	0	0	0	1	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0022	3994	1	0	0	1	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0023	3991	1	0	1	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0024	3994	1	0	1	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0025	3994	1	0	1	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0026	3994	1	0	0	1	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0027	3991	1	1	0	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0028	3993	1	0	0	0	0	1	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0029	3991	1	1	0	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0030	3991	1	1	0	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0031	3991	1	0	0	0	1	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0032	3993	1	1	0	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0033	3994	1	0	0	0	1	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0034	3994	1	0	0	0	0	1	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0035	3991	1	1	0	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0036	3993	1	1	0	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0037	3991	1	1	0	0	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0038	3991	1	0	0	0	0	1	copy fasta	TCF12	chr15	56913644	57294853
TCF12_chr15_56913644_57294853	0/0	t0039	3994	1	0	0	1	0	0	copy fasta	TCF12	chr15	56913644	57294853
TCF15_chr20_599257_615309	0/1	t0001	407	334	56	59	173	8	37	copy fasta	TCF15	chr20	599257	615309
TCF15_chr20_599257_615309	1/0	t0002	407	90	37	20	21	3	8	copy fasta	TCF15	chr20	599257	615309
TCF15_chr20_599257_615309	0/0	t0003	407	4	0	3	0	1	0	copy fasta	TCF15	chr20	599257	615309
TCF15_chr20_599257_615309	0/0	t0004	407	1	1	0	0	0	0	copy fasta	TCF15	chr20	599257	615309
TCF15_chr20_599257_615309	0/0	t0005	424	1	0	0	0	0	1	copy fasta	TCF15	chr20	599257	615309
TCF19_chr6_31153589_31169215	0/1	t0001	2207	140	27	27	57	9	19	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0002	2206	84	8	13	58	3	2	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0003	2207	63	19	1	40	1	2	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0004	2206	40	10	2	22	1	5	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0005	2207	32	10	10	6	1	5	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0006	2207	23	7	8	7	0	1	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0007	2207	17	0	8	3	2	4	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0008	2206	11	0	0	11	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0009	2207	11	1	6	1	1	2	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0010	2207	6	4	2	0	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0011	2206	4	0	0	0	0	4	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0012	2206	3	2	1	0	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0013	2207	2	2	0	0	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0014	2207	2	0	0	2	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0015	2207	2	0	0	2	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0016	2207	2	2	0	0	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0017	2207	2	0	0	0	0	2	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0018	2206	1	0	0	0	0	1	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0019	2207	1	0	0	1	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0020	2207	1	0	0	1	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0021	2207	1	1	0	0	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0022	2207	1	1	0	0	0	0	copy fasta	TCF19	chr6	31153589	31169215