JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TCF19_chr6_31153589_31169215	0/0	t0023	2207	1	0	0	1	0	0	copy fasta	TCF19	chr6	31153589	31169215
TCF19_chr6_31153589_31169215	0/0	t0024	2207	1	0	0	0	0	1	copy fasta	TCF19	chr6	31153589	31169215
TCF20_chr22_42155013_42275653	0/1	t0001	1742	284	38	66	131	14	34	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0002	1743	34	29	2	2	1	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0003	1743	10	10	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0004	1742	4	3	0	1	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0005	1742	3	0	0	3	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0006	1748	2	1	1	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0007	1742	2	2	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0008	1743	2	2	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0009	1747	1	0	1	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0010	1742	1	0	0	1	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0011	1754	1	0	0	1	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0012	1742	1	0	1	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0013	1752	1	1	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0014	1743	1	0	0	1	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0015	1742	1	1	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0016	1742	1	0	0	0	1	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0017	1742	1	1	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0018	1742	1	1	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0019	1742	1	0	0	1	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0020	1743	1	0	1	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0021	1742	1	0	0	1	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF20_chr22_42155013_42275653	0/0	t0022	1742	1	1	0	0	0	0	copy fasta	TCF20	chr22	42155013	42275653
TCF21_chr6_133884113_133897257	1/1	t0001	741	364	60	64	195	12	31	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	t0002	743	38	34	4	0	0	0	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	t0003	745	27	1	15	0	4	7	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	t0004	741	2	2	0	0	0	0	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	t0005	741	1	0	1	0	0	0	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	t0006	741	1	0	0	1	0	0	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	t0007	743	1	1	0	0	0	0	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	t0008	741	1	0	0	0	0	1	copy fasta	TCF21	chr6	133884113	133897257
TCF21_chr6_133884113_133897257	0/0	t0009	741	1	0	0	0	0	1	copy fasta	TCF21	chr6	133884113	133897257
TCF23_chr2_27144004_27161974	0/0	t0001	4243	103	9	13	57	7	17	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0002	4258	57	6	15	27	5	4	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/1	t0003	4243	44	3	7	31	0	2	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0004	4248	42	3	6	30	1	2	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0005	4238	17	12	5	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0006	4238	15	5	5	0	3	2	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0007	4253	11	5	2	2	0	2	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0008	4238	7	3	1	0	1	2	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0009	4233	6	6	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0010	4258	5	0	2	3	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0011	4248	4	0	1	1	1	1	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0012	4238	3	3	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0013	4238	3	3	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0014	4238	3	3	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0015	4244	3	3	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0016	4244	3	0	1	2	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0017	4252	3	3	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974