JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TCF23_chr2_27144004_27161974	0/0	t0018	4263	3	1	0	2	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0019	4242	3	2	1	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0020	4233	2	0	2	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0021	4242	2	2	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0022	4243	2	0	2	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0023	4243	2	0	2	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0024	4259	2	0	0	2	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0025	4258	2	0	0	0	0	2	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0026	4263	2	0	0	2	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0027	4233	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0028	4233	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0029	4233	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0030	4239	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	1/0	t0031	4238	1	0	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0032	4239	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0033	4239	1	0	0	1	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0034	4238	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0035	4237	1	0	1	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0036	4238	1	0	0	0	0	1	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0037	4238	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0038	4243	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0039	4243	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0040	4243	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0041	4244	1	0	0	1	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0042	4245	1	0	0	1	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0043	4243	1	0	0	1	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0044	4243	1	0	0	1	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0045	4243	1	0	0	1	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0046	4244	1	0	0	1	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0047	4243	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0048	4250	1	0	1	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0049	4248	1	0	0	1	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0050	4249	1	0	0	0	0	1	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0051	4253	1	0	1	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0052	4253	1	0	1	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0053	4253	1	0	1	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0054	4258	1	0	1	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0055	4259	1	0	1	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0056	4248	1	0	0	1	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0057	4258	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0058	4258	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0059	4243	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0060	4258	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0061	4243	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0062	4243	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF23_chr2_27144004_27161974	0/0	t0063	4233	1	1	0	0	0	0	copy fasta	TCF23	chr2	27144004	27161974
TCF24_chr8_66941501_66967591	1/1	t0001	1948	231	43	35	110	12	29	copy fasta	TCF24	chr8	66941501	66967591
TCF24_chr8_66941501_66967591	0/0	t0002	1948	38	27	7	1	0	3	copy fasta	TCF24	chr8	66941501	66967591
TCF24_chr8_66941501_66967591	0/0	t0003	1948	27	10	0	11	0	6	copy fasta	TCF24	chr8	66941501	66967591
TCF24_chr8_66941501_66967591	0/0	t0004	1948	10	0	8	2	0	0	copy fasta	TCF24	chr8	66941501	66967591