JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TCF24_chr8_66941501_66967591	0/0	t0005	1948	1	0	0	0	0	1	copy fasta	TCF24	chr8	66941501	66967591
TCF24_chr8_66941501_66967591	0/0	t0006	1948	1	0	1	0	0	0	copy fasta	TCF24	chr8	66941501	66967591
TCF24_chr8_66941501_66967591	0/0	t0007	1948	1	0	1	0	0	0	copy fasta	TCF24	chr8	66941501	66967591
TCF24_chr8_66941501_66967591	0/0	t0008	1948	1	0	0	0	0	1	copy fasta	TCF24	chr8	66941501	66967591
TCF25_chr16_89868592_89916379	1/1	t0001	218	279	71	64	87	14	41	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	t0002	218	18	18	0	0	0	0	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	t0003	218	1	1	0	0	0	0	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	t0004	218	1	0	0	0	0	1	copy fasta	TCF25	chr16	89868592	89916379
TCF25_chr16_89868592_89916379	0/0	t0005	218	1	0	0	1	0	0	copy fasta	TCF25	chr16	89868592	89916379
TCF3_chr19_1604292_1657615	1/1	t0001	2771	63	20	12	14	5	10	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0002	2772	56	17	13	20	1	5	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0003	2771	17	6	9	0	2	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0004	2772	14	1	5	3	1	4	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0005	2773	13	3	3	4	0	3	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0006	2771	11	0	0	11	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0007	2770	11	0	0	10	0	1	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0008	2770	10	1	6	1	1	1	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0009	2771	8	0	4	3	0	1	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0010	2773	6	0	1	5	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0011	2772	6	0	4	2	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0012	2772	6	0	0	5	1	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0013	2770	5	5	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0014	2771	4	0	0	4	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0015	2771	4	0	3	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0016	2769	4	0	3	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0017	2773	4	0	0	3	0	1	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0018	2771	3	3	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0019	2772	3	0	0	3	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0020	2771	3	3	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0021	2772	3	2	1	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0022	2772	3	0	0	3	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0023	2773	2	0	0	1	0	1	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0024	2772	2	0	2	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0025	2774	2	0	0	0	0	2	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0026	2772	2	1	1	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0027	2771	2	2	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0028	2773	2	0	0	2	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0029	2771	2	0	2	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0030	2771	2	2	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0031	2770	2	1	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0032	2773	2	1	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0033	2774	2	0	0	1	0	1	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0034	2771	2	0	0	2	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0035	2774	2	1	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0036	2773	2	1	1	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0037	2772	1	1	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0038	2772	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0039	2771	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0040	2773	1	0	0	0	0	1	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0041	2773	1	0	0	0	0	1	copy fasta	TCF3	chr19	1604292	1657615