JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TCF3_chr19_1604292_1657615	0/0	t0092	2772	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0093	2772	1	0	1	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0094	2773	1	0	1	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0095	2772	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0096	2772	1	0	0	0	0	1	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0097	2774	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0098	2774	1	0	1	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0099	2774	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0100	2774	1	0	0	0	0	1	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0101	2774	1	0	0	0	0	1	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0102	2773	1	0	0	1	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF3_chr19_1604292_1657615	0/0	t0103	2772	1	1	0	0	0	0	copy fasta	TCF3	chr19	1604292	1657615
TCF4_chr18_55217185_55593192	1/0	t0001	6026	29	1	9	9	0	9	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0002	6025	20	3	8	8	0	1	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0003	6027	9	3	1	4	0	1	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0004	6026	7	0	4	2	1	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0005	6026	7	6	1	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0006	6026	4	4	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/1	t0007	6025	3	1	1	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0008	6023	3	3	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0009	6029	3	3	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0010	6027	2	2	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0011	6026	2	2	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0012	6028	2	1	1	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0013	6027	2	1	1	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0014	6026	2	2	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0015	6027	1	0	0	1	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0016	6025	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0017	6026	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0018	6027	1	0	0	1	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0019	6026	1	0	0	0	0	1	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0020	6026	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0021	6026	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0022	6025	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0023	6025	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0024	6025	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0025	6025	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0026	6025	1	0	0	1	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0027	6025	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0028	6025	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0029	6022	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0030	6025	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0031	6025	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0032	6026	1	0	0	0	0	1	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0033	6026	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0034	6026	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0035	6025	1	0	0	0	0	1	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0036	6028	1	0	0	0	1	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0037	6028	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0038	6027	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192