JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TCF4_chr18_55217185_55593192	0/0	t0039	6026	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0040	6026	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF4_chr18_55217185_55593192	0/0	t0041	6025	1	1	0	0	0	0	copy fasta	TCF4	chr18	55217185	55593192
TCF7L1_chr2_85128392_85315387	0/0	t0001	1219	136	48	26	41	6	15	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	1/1	t0002	1219	70	35	13	14	2	4	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	t0003	1219	15	1	4	7	2	1	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	t0004	1219	3	1	1	1	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	t0005	1219	3	0	2	0	1	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	t0006	1219	2	0	1	0	1	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	t0007	1219	2	1	1	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	t0008	1219	1	1	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	t0009	1219	1	1	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	t0010	1219	1	1	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	t0011	1219	1	0	0	1	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L1_chr2_85128392_85315387	0/0	t0012	1219	1	1	0	0	0	0	copy fasta	TCF7L1	chr2	85128392	85315387
TCF7L2_chr10_112945247_113172678	0/0	t0001	2218	56	18	10	20	0	8	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0002	2217	23	8	10	1	4	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0003	2218	11	1	7	2	1	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0004	2218	10	9	1	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	1/0	t0005	2217	10	1	4	0	1	3	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0006	2217	10	9	1	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0007	2218	7	0	1	3	0	3	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0008	2217	6	6	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0009	2218	5	1	2	0	2	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0010	2216	5	3	1	0	0	1	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0011	2218	5	4	1	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/1	t0012	2217	5	0	2	0	1	1	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0013	2217	5	4	1	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0014	2217	3	3	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0015	2217	3	1	0	0	0	2	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0016	2218	2	0	0	2	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0017	2218	2	0	2	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0018	2218	2	0	0	1	0	1	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0019	2217	2	2	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0020	2218	1	1	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0021	2218	1	1	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0022	2218	1	0	1	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0023	2218	1	0	0	0	0	1	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0024	2218	1	1	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0025	2218	1	0	1	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0026	2219	1	1	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0027	2219	1	0	1	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0028	2217	1	1	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0029	2217	1	1	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0030	2216	1	1	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0031	2217	1	1	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0032	2217	1	1	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0033	2217	1	1	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0034	2217	1	0	1	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0035	2217	1	0	0	0	0	1	copy fasta	TCF7L2	chr10	112945247	113172678