JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TCF7L2_chr10_112945247_113172678	0/0	t0036	2217	1	0	0	0	0	1	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0037	2217	1	1	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0038	2217	1	1	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0039	2217	1	0	0	1	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0040	2217	1	0	1	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0041	2218	1	0	1	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0042	2218	1	1	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0043	2218	1	0	0	0	1	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0044	2218	1	0	1	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0045	2217	1	1	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0046	2216	1	1	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7L2_chr10_112945247_113172678	0/0	t0047	2217	1	1	0	0	0	0	copy fasta	TCF7L2	chr10	112945247	113172678
TCF7_chr5_134109681_134153210	0/0	t0001	2134	77	13	15	40	3	6	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0002	2135	72	0	10	53	1	8	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0003	2135	34	6	13	9	1	5	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/1	t0004	2135	28	4	4	6	3	10	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0005	2134	20	1	3	8	1	7	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0006	2132	10	9	1	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0007	2133	9	6	2	1	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0008	2136	8	0	0	6	0	2	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0009	2136	7	1	5	0	1	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0010	2135	6	4	0	1	0	1	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0011	2135	6	0	3	0	2	1	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0012	2137	6	6	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0013	2134	5	5	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0014	2136	5	0	0	5	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0015	2132	4	3	1	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0016	2135	4	0	1	0	2	1	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0017	2134	3	1	0	0	0	2	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0018	2135	2	2	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0019	2136	2	1	0	1	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0020	2133	2	2	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0021	2135	2	1	1	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0022	2135	2	0	0	2	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0023	2135	2	0	0	2	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0024	2134	2	0	0	2	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0025	2134	1	0	0	1	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0026	2135	1	0	0	1	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0027	2136	1	1	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0028	2133	1	1	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0029	2135	1	1	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0030	2134	1	1	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0031	2135	1	0	1	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0032	2132	1	1	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	1/0	t0033	2134	1	0	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0034	2136	1	1	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0035	2137	1	1	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0036	2134	1	0	0	0	0	1	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0037	2134	1	0	0	1	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0038	2134	1	0	0	1	0	0	copy fasta	TCF7	chr5	134109681	134153210