JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TCF7_chr5_134109681_134153210	0/0	t0039	2134	1	0	1	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0040	2135	1	0	0	1	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0041	2134	1	1	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0042	2135	1	0	0	1	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0043	2132	1	1	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0044	2135	1	1	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0045	2132	1	1	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0046	2136	1	1	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0047	2134	1	1	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0048	2133	1	0	1	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0049	2136	1	1	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCF7_chr5_134109681_134153210	0/0	t0050	2137	1	1	0	0	0	0	copy fasta	TCF7	chr5	134109681	134153210
TCFL5_chr20_62836005_62866822	1/1	t0001	1123	132	14	35	53	6	22	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0002	1109	62	14	6	42	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0003	1130	56	6	9	32	3	6	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0004	1123	28	21	7	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0005	1118	22	1	0	18	0	3	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0006	1125	18	13	3	0	1	1	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0007	1124	16	0	9	0	3	4	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0008	1125	8	7	1	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0009	1116	7	2	5	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0010	1124	7	3	2	0	1	1	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0011	1130	6	6	0	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0012	1130	6	0	0	6	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0013	1117	3	3	0	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0014	1117	2	0	0	2	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0015	1112	2	2	0	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0016	1125	2	2	0	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0017	1144	2	0	0	2	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0018	1111	1	0	0	1	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0019	1125	1	1	0	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0020	1123	1	1	0	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0021	1123	1	0	1	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0022	1125	1	0	1	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0023	1125	1	0	1	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0024	1123	1	0	0	1	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0025	1123	1	0	1	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0026	1123	1	0	0	1	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0027	1131	1	0	1	0	0	0	copy fasta	TCFL5	chr20	62836005	62866822
TCFL5_chr20_62836005_62866822	0/0	t0028	1137	1	0	0	0	0	1	copy fasta	TCFL5	chr20	62836005	62866822
TCHHL1_chr1_152079141_152094064	1/1	t0001	892	355	90	63	145	12	43	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	t0002	892	15	1	10	1	2	1	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	t0003	892	4	0	0	4	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	t0004	892	1	1	0	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHHL1_chr1_152079141_152094064	0/0	t0005	892	1	0	1	0	0	0	copy fasta	TCHHL1	chr1	152079141	152094064
TCHH_chr1_152101317_152120444	0/0	t0001	1154	198	25	49	94	7	23	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	1/1	t0002	1154	185	59	28	72	9	15	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	t0003	1154	10	1	1	6	0	2	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	t0004	1158	6	0	0	6	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	t0005	1154	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444