JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TCHH_chr1_152101317_152120444	0/0	t0006	1154	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHH_chr1_152101317_152120444	0/0	t0007	1154	1	1	0	0	0	0	copy fasta	TCHH	chr1	152101317	152120444
TCHP_chr12_109895274_109923069	1/1	t0001	1600	290	78	37	124	14	35	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	t0002	1600	13	5	7	0	1	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	t0003	1600	6	0	5	0	1	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	t0004	1600	5	0	2	1	0	2	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	t0005	1600	3	0	3	0	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	t0006	1600	3	2	1	0	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	t0007	1600	3	3	0	0	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	t0008	1600	2	1	1	0	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	t0009	1600	1	0	0	0	0	1	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	t0010	1600	1	0	0	1	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	t0011	1600	1	0	1	0	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	t0012	1600	1	0	0	1	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	t0013	1600	1	0	0	1	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	t0014	1600	1	0	1	0	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCHP_chr12_109895274_109923069	0/0	t0015	1600	1	1	0	0	0	0	copy fasta	TCHP	chr12	109895274	109923069
TCIM_chr8_40148482_40160310	0/0	t0001	1508	168	6	36	94	8	24	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/1	t0002	1508	118	15	20	62	7	13	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	t0003	1509	70	27	9	27	1	6	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	1/0	t0004	1509	59	28	9	18	1	2	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	t0005	1510	11	11	0	0	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	t0006	1510	6	1	4	0	1	0	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	t0007	1509	3	0	1	1	0	1	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	t0008	1509	2	2	0	0	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	t0009	1508	2	0	0	2	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	t0010	1509	1	0	1	0	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	t0011	1509	1	1	0	0	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	t0012	1508	1	1	0	0	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	t0013	1508	1	0	0	1	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	t0014	1508	1	1	0	0	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	t0015	1509	1	1	0	0	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	t0016	1509	1	1	0	0	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	t0017	1509	1	1	0	0	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	t0018	1509	1	0	0	1	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	t0019	1510	1	1	0	0	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIM_chr8_40148482_40160310	0/0	t0020	1508	1	1	0	0	0	0	copy fasta	TCIM	chr8	40148482	40160310
TCIRG1_chr11_68034025_68055895	1/1	t0001	176	388	92	74	160	16	44	copy fasta	TCIRG1	chr11	68034025	68055895
TCL1A_chr14_95704947_95719125	1/1	t0001	1001	308	63	55	126	18	44	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	t0002	972	28	0	1	27	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	t0003	992	14	13	1	0	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	t0004	1030	4	4	0	0	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	t0005	1030	3	3	0	0	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	t0006	1001	3	0	0	3	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	t0007	1001	2	0	2	0	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	t0008	1001	2	0	0	0	0	2	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	t0009	1001	1	0	0	1	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	t0010	972	1	0	1	0	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	t0011	972	1	1	0	0	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	t0012	1001	1	1	0	0	0	0	copy fasta	TCL1A	chr14	95704947	95719125