JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TCL1A_chr14_95704947_95719125	0/0	t0013	1001	1	1	0	0	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	t0014	1001	1	0	0	1	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	t0015	1001	1	1	0	0	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	t0016	1030	1	0	0	1	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	t0017	1001	1	1	0	0	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1A_chr14_95704947_95719125	0/0	t0018	972	1	0	0	1	0	0	copy fasta	TCL1A	chr14	95704947	95719125
TCL1B_chr14_95681426_95697628	0/1	t0001	756	226	44	16	139	7	19	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	1/0	t0002	756	157	16	53	59	9	19	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	t0003	756	42	20	12	7	0	3	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	t0004	756	13	12	1	0	0	0	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	t0005	756	1	0	0	1	0	0	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	t0006	756	1	1	0	0	0	0	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	t0007	756	1	0	0	0	0	1	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	t0008	756	1	1	0	0	0	0	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	t0009	756	1	1	0	0	0	0	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	t0010	756	1	1	0	0	0	0	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	t0011	756	1	1	0	0	0	0	copy fasta	TCL1B	chr14	95681426	95697628
TCL1B_chr14_95681426_95697628	0/0	t0012	756	1	1	0	0	0	0	copy fasta	TCL1B	chr14	95681426	95697628
TCN1_chr11_59847808_59871487	1/1	t0001	185	335	98	68	117	18	32	copy fasta	TCN1	chr11	59847808	59871487
TCN1_chr11_59847808_59871487	0/0	t0002	185	1	0	0	1	0	0	copy fasta	TCN1	chr11	59847808	59871487
TCN2_chr22_30602174_30632271	1/1	t0001	909	204	26	28	109	7	32	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0002	909	89	10	12	65	1	1	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0003	909	68	6	12	40	2	8	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0004	910	31	13	13	0	5	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0005	909	22	20	2	0	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0006	909	13	3	9	0	1	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0007	910	10	6	1	0	0	3	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0008	909	5	5	0	0	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0009	909	4	0	4	0	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0010	909	3	3	0	0	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0011	909	3	1	1	0	1	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0012	909	2	0	0	0	0	2	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0013	909	1	0	0	0	0	1	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0014	909	1	0	1	0	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0015	909	1	1	0	0	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0016	909	1	0	0	0	1	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0017	910	1	0	0	1	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0018	910	1	0	0	0	0	1	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0019	909	1	0	0	1	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0020	909	1	1	0	0	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0021	910	1	0	1	0	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0022	909	1	1	0	0	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0023	909	1	0	0	1	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCN2_chr22_30602174_30632271	0/0	t0024	909	1	0	0	1	0	0	copy fasta	TCN2	chr22	30602174	30632271
TCOF1_chr5_150352697_150405293	1/1	t0001	557	323	92	50	124	13	42	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	t0002	558	27	2	2	15	2	6	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	t0003	557	3	0	2	0	0	1	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	t0004	557	2	0	0	1	0	1	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	t0005	557	2	1	1	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	t0006	557	1	1	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293