Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRAF_chr7_140714337_140929929	0/0	t0010	7384	3	1	0	1	0	1	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0011	7385	1	0	0	0	0	1	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0012	7384	1	0	0	1	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0013	7384	1	1	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0014	7383	1	1	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0015	7384	1	1	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0016	7386	1	1	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0017	7384	1	1	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0018	7384	1	0	0	0	0	1	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0019	7384	1	1	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0020	7384	1	1	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0021	7384	1	0	0	0	1	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0022	7384	1	0	0	1	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0023	7384	1	0	1	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0024	7380	1	0	0	0	0	1	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0025	7380	1	0	0	0	1	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0026	7384	1	0	0	0	0	1	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0027	7385	1	0	1	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/1	t0028	7384	1	0	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0029	7384	1	1	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0030	7384	1	0	0	1	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0031	7385	1	0	0	1	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140714337_140929929	0/0	t0032	7384	1	1	0	0	0	0	copy fasta	BRAF	chr7	140714337	140929929
BRAF_chr7_140725665_140929929	1/0	t0001	4159	34	10	8	9	1	5	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0002	4136	31	7	7	10	0	7	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0003	4138	16	15	1	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0004	4144	11	0	3	5	1	2	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0005	4137	8	7	1	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/1	t0006	4160	7	2	3	1	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0007	4158	6	0	1	1	1	3	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0008	4137	5	5	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0009	4145	5	0	0	2	0	3	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0010	4165	5	0	0	5	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0011	4159	4	3	0	0	1	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0012	4160	4	4	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0013	4142	3	3	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0014	4149	3	0	2	1	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0015	4172	3	0	0	3	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0016	4138	2	2	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0017	4160	2	0	2	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0018	4145	2	0	0	1	0	1	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0019	4146	2	0	0	0	0	2	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0020	4170	2	0	0	2	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0021	4134	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0022	4157	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0023	4138	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0024	4139	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0025	4139	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0026	4144	1	0	1	0	0	0	copy fasta	BRAF	chr7	140725665	140929929
BRAF_chr7_140725665_140929929	0/0	t0027	4145	1	1	0	0	0	0	copy fasta	BRAF	chr7	140725665	140929929