JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TCOF1_chr5_150352697_150405293	0/0	t0007	557	1	1	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	t0008	557	1	1	0	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	t0009	557	1	0	0	0	1	0	copy fasta	TCOF1	chr5	150352697	150405293
TCOF1_chr5_150352697_150405293	0/0	t0010	557	1	0	1	0	0	0	copy fasta	TCOF1	chr5	150352697	150405293
TCP10L_chr21_32568721_32590523	1/0	t0001	3157	177	23	41	87	4	21	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0002	3158	103	9	23	52	4	15	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0003	3157	56	26	8	16	2	4	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0004	3157	11	6	2	0	1	2	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0005	3157	10	5	2	0	2	1	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0006	3157	5	0	0	5	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0007	3158	4	4	0	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0008	3157	3	0	2	0	1	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0009	3157	3	3	0	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0010	3157	3	2	0	0	0	1	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0011	3158	3	3	0	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/1	t0012	1250	2	0	0	0	0	1	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0013	3157	2	2	0	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0014	3157	2	0	0	2	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0015	3157	2	2	0	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0016	3157	2	0	0	2	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0017	3158	1	0	0	1	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0018	3157	1	0	0	1	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0019	3157	1	0	0	0	0	1	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0020	3158	1	1	0	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0021	3158	1	1	0	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0022	3157	1	1	0	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0023	3157	1	1	0	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP10L_chr21_32568721_32590523	0/0	t0024	3157	1	1	0	0	0	0	copy fasta	TCP10L	chr21	32568721	32590523
TCP11L1_chr11_33034572_33078550	1/1	t0001	1120	357	84	62	162	14	33	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/0	t0002	1120	9	0	0	9	0	0	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/0	t0003	1120	7	0	2	4	1	0	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/0	t0004	1144	5	0	3	0	0	2	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/0	t0005	1119	4	3	1	0	0	0	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/0	t0006	1120	3	3	0	0	0	0	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/0	t0007	1120	1	0	0	1	0	0	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/0	t0008	1120	1	1	0	0	0	0	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/0	t0009	1149	1	0	0	0	0	1	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/0	t0010	1120	1	0	0	0	1	0	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L1_chr11_33034572_33078550	0/0	t0011	1120	1	1	0	0	0	0	copy fasta	TCP11L1	chr11	33034572	33078550
TCP11L2_chr12_106297733_106352003	0/1	t0001	718	96	3	17	55	6	14	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/0	t0002	719	68	20	13	28	5	2	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/0	t0003	718	66	19	19	13	5	10	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/0	t0004	719	56	18	16	17	0	5	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/0	t0005	718	19	16	3	0	0	0	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/0	t0006	718	7	6	1	0	0	0	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	1/0	t0007	718	6	0	0	5	0	0	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/0	t0008	718	6	5	1	0	0	0	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/0	t0009	718	5	0	2	0	0	3	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/0	t0010	718	4	2	0	0	0	2	copy fasta	TCP11L2	chr12	106297733	106352003
TCP11L2_chr12_106297733_106352003	0/0	t0011	719	3	0	2	0	0	1	copy fasta	TCP11L2	chr12	106297733	106352003